Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40760 873 / 0 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1) AT3G27300 833 / 0 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G13110 483 / 2e-161 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 478 / 2e-159 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 472 / 2e-157 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G09420 352 / 1e-110 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014615 [exp] 1017 / 0 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 780 / 0 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10006386 [exp] 475 / 2e-158 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 465 / 2e-154 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 463 / 2e-153 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10012340 [exp] 395 / 3e-129 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012339 [exp] 79 / 2e-17 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070200 [exp] 901 / 0 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.001G337400 [exp] 868 / 0 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.014G166800 [exp] 476 / 5e-159 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.001G059900 [exp] 461 / 5e-153 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 458 / 7e-152 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 360 / 5e-114 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.005G005866 [exp] 56 / 1e-08 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00479 [flax] [poplar] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032079 pacid=23161070 polypeptide=Lus10032079 locus=Lus10032079.g ID=Lus10032079.BGIv1.0 annot-version=v1.0 ATGGGAGGAAGCGGAGATCAATGGATAATGGAGAAGAGAGATAGTTTCAGGAGCGAGCCTGTTGAGTTGGATGTCCCTGAAACTGGGTGCCTCTCAATCA TTGTGCTTGGTGCTTCTGGTGATCTTGCCAAGAAGAAGACTTTCCCTGCTCTTTTCAATCTTTACCGTCAGGGATTTCTCCAATCAAATGAAGTTCACAT CTTTGGATATGCAAGGACTAAGATCTCTGATGATGATCTTAGAAATCGCATCCGTAGTTATCTTGAAAAGGATTCGGTGAAGTTTGAGGATGTATCCAAG TTCTTACAACTGATCAAATATGTTAGTGGCTCTTATGACACTGAGGAAGGGTTTCATCTGTTGGATAAGGAAATTTCGCTGCATGAAGAATCCAAAAATA GCACAGAAGGGTCATCTAGGAGATTGTTTTATCTTGCACTTCCTCCGTCAGTTTATCCAGTGGTTTGCAGGATGATCAAGCTTTGTTGTATGAACAAATC TCATCTTGGTGGCTGGACCCGCATTGTCGTTGAAAAGCCATTTGGCAAGGATTTGGAATCTGCAGAGAAGCTGAGTAACCAAATCGGGGACTTGTTTGAG GAACCTCAACTTTACCGTATCGACCACTATCTGGGAAAAGAATTGGTGCAGAACTTGTTGGTGCTTCGCTTTGCAAATCGCTTCTTTTTACCTCTCTGGA ACCGAGACAACATTCAGAATGTCCAGATTGTTTTCCGTGAGGATTTCGGAACTGAAGGTCGTGGTGGATATTTTGATGAATACGGAATCATCCGTGATAT CATTCAAAATCACCTGTTACAAGTTCTTTGTCTCGTTGCAATGGAAAAGCCTGTCTCTTTGAAGCCGGAACACATTCGTGACGAGAAAGTCAAGGTTCTT CAATCGGTGCTGCCAATTAATGATGAAGAGGTTGTCCTAGGGCAATACAATGGATATACAGATGATCCAACTGTTCCGGATCAGTCTAACACCCCGACAT TCGCTACTGTTGTCTTACGAATCCATAATGAGAGATGGGAAGGTGTCCCTTTTATCCTGAAGGCAGGGAAAGCATTAAATTCCAGAAAGGCTGAGATCCG AATTCAATTCAAGGATGTTCCCGGTGATATATTCAAATGTAAAAAGCAGGGAAGAAATGAATTTGTGATACGCCTGCAGCCATCGGAAGCCATGTACATG AAACTCACAGTTAAGCAGCCTGGATTGGATATGTCAACAGCTCAAAGTGAGCTAGACTTGTCTTATAGGCAGCGTTACCAAAATGTCACCATTCCAGAGG CTTACGAACGCCTCATTCTCGACACAATCAGAGGCGATCAGCAGCATTTCGTTCGTAGAGATGAGTTGAAGGCTGCATGGGAGATCTTCACACCACTTCT GCATAGGATTGATGATGGGGAGATGAAGCCGATGCCATACCAACCAGGCAGCAGGGGTCCTGCAGAGGCGGATGAGCTGTTAGAGAAAGCCGGTTACATT AAGTATGTGAGCGGGTCTTACGATACCGACGAAGGGTTTAAACTTCTGGATAAGGAAATTTCAGAGCATGAAGAGTCCAAAAACAGTGCAGCTGGGTCTA GCAGAAGATTGTTCTATTTTGCACTTCCTCCATCAGTTTATCCAGTTGTCTGCAACATGATCAAACAATACTGTATGAGCAAATCTGATCGTGGTGGCTG GACCCGAATTGTCGTTGAGAAACCATTCGGCAAGGACTTGGAAACTGCAGAGGAACTCAGTGCACAGATAGGAGAGCCGTTTGAGGAACATCAGATTTAC CGCATTGATCACTACTTGGGAAAAGAACTGGTTCAGAATTTGGTTCTTTCCATCATGCTTTTTGGTTCAATCTTGAGGTTGGTGCTTCGCTTTGCAAATC GCTTGTTCTTACCCTTATGGAACCGAGATAACATTGACAATGTCCAGGTGAACGAATCAAGAACATTTCTTTACAACTATCCTTCTGAAGGCCGGGGTGG ATATTTTGATGAATACGGATGGGAAGGTGTGCCTTTCATTCTAAAGGCAGGGAAAGCACTGGGTTCAAAGAAGGCAGATATTCGTATACAGTTCAAGGAT GTTCCTGGTGATATATTCAAATGCAAAAATCAAGGAAGGAATGAGTTTGTAATGAGGCTGCAACCCTCGGAAGCCATGTACATGAAACTTGCAGTTAAAC AGCCTGGACTGGAGATGTCAACGGTTCAGAGCGAACTAGACTTGTCCTATAAACAACGTTATCAAGGCGTCACCATTCCTGATGCTTACGAACTCCTCAT TCTCGATATGATCAGAGGGGATCAGCAACATTTTGTTCGAAGAGATGAGTTGAAGGCTGCTTGGCAGATCTTCACACCAGTACTGCACAGGATCGACAAT GGCGAGCTGAAGACGGTTTCATACGAACATGGCAGCAGAGGGCCTGCAGAAGCTGACGAGCTGCTGGTGAAAGCTGGCTATGTCCAGACTCACGGTTACA GATGGATTCCTCCTGCTATATATCTTCATTAG
AA sequence Show only first row Show all	>Lus10032079 pacid=23161070 polypeptide=Lus10032079 locus=Lus10032079.g ID=Lus10032079.BGIv1.0 annot-version=v1.0 MGGSGDQWIMEKRDSFRSEPVELDVPETGCLSIIVLGASGDLAKKKTFPALFNLYRQGFLQSNEVHIFGYARTKISDDDLRNRIRSYLEKDSVKFEDVSK FLQLIKYVSGSYDTEEGFHLLDKEISLHEESKNSTEGSSRRLFYLALPPSVYPVVCRMIKLCCMNKSHLGGWTRIVVEKPFGKDLESAEKLSNQIGDLFE EPQLYRIDHYLGKELVQNLLVLRFANRFFLPLWNRDNIQNVQIVFREDFGTEGRGGYFDEYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHIRDEKVKVL QSVLPINDEEVVLGQYNGYTDDPTVPDQSNTPTFATVVLRIHNERWEGVPFILKAGKALNSRKAEIRIQFKDVPGDIFKCKKQGRNEFVIRLQPSEAMYM KLTVKQPGLDMSTAQSELDLSYRQRYQNVTIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDDGEMKPMPYQPGSRGPAEADELLEKAGYI KYVSGSYDTDEGFKLLDKEISEHEESKNSAAGSSRRLFYFALPPSVYPVVCNMIKQYCMSKSDRGGWTRIVVEKPFGKDLETAEELSAQIGEPFEEHQIY RIDHYLGKELVQNLVLSIMLFGSILRLVLRFANRLFLPLWNRDNIDNVQVNESRTFLYNYPSEGRGGYFDEYGWEGVPFILKAGKALGSKKADIRIQFKD VPGDIFKCKNQGRNEFVMRLQPSEAMYMKLAVKQPGLEMSTVQSELDLSYKQRYQGVTIPDAYELLILDMIRGDQQHFVRRDELKAAWQIFTPVLHRIDN GELKTVSYEHGSRGPAEADELLVKAGYVQTHGYRWIPPAIYLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	0	1
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	1.4	0.9263
AT1G31130			unknown protein		Lus10018940 [exp]	2.6	0.8467
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	2.8	0.8510
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	3.7	0.8627
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10005992 [exp]	10.5	0.8523
AT4G15420			Ubiquitin fusion degradation U...		Lus10015140 [exp]	14.1	0.8155
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10033974 [exp]	16.4	0.7890
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	18.3	0.8175
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	20.7	0.8281
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10022592 [exp]	23.5	0.8125

Compare expression of checked genes

Lus10032079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.