Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27310 224 / 2e-73 PUX1 plant UBX domain-containing protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014616 [exp] 353 / 2e-124 AT3G27310 296 / 1e-101 plant UBX domain-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G264500 [exp] 269 / 6e-91 AT3G27310 237 / 1e-78 plant UBX domain-containing protein 1 (.1) Potri.009G059300 [exp] 254 / 4e-85 AT3G27310 209 / 9e-68 plant UBX domain-containing protein 1 (.1) Potri.001G337533 [exp] 135 / 5e-39 AT3G27310 120 / 1e-33 plant UBX domain-containing protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00789 [flax] [poplar] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Lus10032080 pacid=23161178 polypeptide=Lus10032080 locus=Lus10032080.g ID=Lus10032080.BGIv1.0 annot-version=v1.0 ATGATCGTTGATAGCTCTTATTCTCATCTACATCTGAAGCGACGTAGGCTCACCAGTCTCGATTCCATGGAAGCTCAAGAAGCCAAGGCCAAGTTTGCTG CTGTGAAAGAAAAGTTTGGGCGAGATCTTCGTGTATTTGAAACCTCACCAATCTCTGCATCCCCAAGTCAGGTGTCTAATGATGATGAGGCAGATGACTA CTATGAGTTCACAGCGGAGGACTATTATCGTACTCTTGGGAAAAAGAAAGACGATAAAACTTTGAAGACGAGAAAACTCCGTGAAGCTGAAGAAGCAGCT CGCAGGTCAAGAATAACAAAGGCTGTTATCAGAGTTCGGTTTCCTGATAACATCACACTGGAGGTGCCATTTCAATCGTCAGAACAGCTGCAGAGCCTAT TCGACCTTCTTGCTAAAGTCGTTACTCACTCAGAAGTACCATTCTATCTTTTCACAACTCCTCCAAAGAAGCAAATCAAAGACCTCTCGGTTGATTTCTA CTCAGCAGGCTTCATTCCTGGTGCAATTGTGTATTTCGCATATGATCTACCTAAAGGAGATGATGCAGCTGTTACGTCTGGTCCGTATCTACAAGAAGAG ATTATGTCTTTGAAAGGGCTGGAGATCATACCGGAACTAGTGGAGCCTGTTCATACCGCCTCAGAACCAGCAACGACGGAGCCTACTGTTGCTGCACCTC CTCCCCAAGAGCGTAAGCCTGCCGAGAGAAAGCTCGTGAAACCAAAGTGGATGAAATGA
AA sequence Show only first row Show all	>Lus10032080 pacid=23161178 polypeptide=Lus10032080 locus=Lus10032080.g ID=Lus10032080.BGIv1.0 annot-version=v1.0 MIVDSSYSHLHLKRRRLTSLDSMEAQEAKAKFAAVKEKFGRDLRVFETSPISASPSQVSNDDEADDYYEFTAEDYYRTLGKKKDDKTLKTRKLREAEEAA RRSRITKAVIRVRFPDNITLEVPFQSSEQLQSLFDLLAKVVTHSEVPFYLFTTPPKKQIKDLSVDFYSAGFIPGAIVYFAYDLPKGDDAAVTSGPYLQEE IMSLKGLEIIPELVEPVHTASEPATTEPTVAAPPPQERKPAERKLVKPKWMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27310		PUX1	plant UBX domain-containing pr...		Lus10032080 [exp]	0	1
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	14.5	0.8312
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	14.7	0.8062
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10011587 [exp]	19.2	0.8209
AT5G53280		PDV1	plastid division1 (.1)		Lus10039325 [exp]	21.7	0.7681
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	23.2	0.8192
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	24.4	0.8403
AT5G56340		ATCRT1	RING/U-box superfamily protein...		Lus10013397 [exp]	24.4	0.8273
AT3G12760			unknown protein		Lus10009599 [exp]	25.1	0.8018
AT4G29960			unknown protein		Lus10001629 [exp]	28.4	0.8287
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	33.2	0.8310

Compare expression of checked genes

Lus10032080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.