Plant FIBer expression Database

Lus10032081 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40740 678 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014617
[exp]
948 / 0 AT5G40740 988 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G337700
[exp]
724 / 0 AT5G40740 954 / 0.0 unknown protein
Potri.001G337600
[exp]
711 / 0 AT5G40740 949 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10032081 pacid=23161107 polypeptide=Lus10032081 locus=Lus10032081.g ID=Lus10032081.BGIv1.0 annot-version=v1.0
ATGGAGCTGGAGAGCGCAATGTACACCAACTGTTTGTTGCTAGGTCTGGATCCGAACGTCATCGGCCTCGGGACCTCCTCCAACGGCAGTCCTCGAGTTG
GCCTCTTCCGCCATTCCAACCCTAAATTGGGCGAGCAGCTCCTCTACTTCATACTCTCCTCCCTTCGTGGTCCTGTTCAATCCGCCAAAGATTTCGACAA
GGTGTGGCCGATTTTTGATTCGGCACAGTCGCGCGATTTTCGTAAGGTAAATCCCAAGGGGCACTGCCGAGGAGTAATTCGAGGGTTTCCTCGCTTGCTA
CGTGTTGCGGTCCGAGGTAGATTTGTGGAACTTCTATGGCAGCTTTCTTTACATGCCCTAAGGGAAGTTCACAGGCGGACATTTTCAGCTGATGTAGCTT
CAAACCCGCTACCTGCTTCGCTAACAGATGTTGCTTTTCAGCATGCAGCCACTCTTCTTCCTGTAACGAAGGAATGGTATGCTGCTTGCACTCATCAGGT
AGCAGATACTAATCAGATATGGACAGACCTCATGTTTTTTTCCGAGATGCATCACGAGTCTGATGGCCAATGCATTTACTCCATGTTTTCTCATCATTTC
GTGCATTTTTTAACTTTCGGTTGTGGTAATTTGAATATCTCGATGGAACAGGCTAGAGTGGCACTTGAAAGAAGAAGGTTTCTCAAGAATGCAGAGATGG
CTGTACAAAGGCAGGCTATGTGGTCAAATTTGGCTCATGAAATGACAGCAGAGTTCCGTGGTCTCTGTGCTGAAGAGGCTTATTTGCAGCAAGAGCTGGA
AAAGTTGCATGACTTGAGGAACAAAGTGAAATCAGAGGGAGAAGTATGGGATGATCTCGTTTCTAGCTCTAGTCAGAATTCACATCTGGTTTCAAAGGCC
AGCCGTCTTTGGGAATCTATATTAGCTCGCAAAAGTCAACATGAAGTTCTGGCTTCAGGCCCAATTGAGGACCTTATAGCTCATCGAGAGCACAGGTACC
GAATTTCTGGATCAGCTTTGCTCTCTGCGATGGATCAAAGTTCTCAGGTTCCCAACAATCATTCACATTTGGTGGATAAAGAACAAAGTGATGGATCTTA
TGATGAGACAGATTCTAGAGCTGATGATAGAGGTGGAAGAGTCCATCAAACTGTTGATGTTGCAGAAATCATCCGCCGTTGGACACATGCATTGCAGCGT
ATCCATAAGCAGTCACTTCACATGGCAAAAGCTAATGATGGGGAAGGTCCTGATATATTGAGAAGTGGTAAGGATGGGAGTGCAAGTGGCCATGCTGAGT
CTTTAGCTGCAACTTTAGCCGAACATCAGCAACATCTTTCTAGTTTCCAGGTGCTAATTAATCAACTTAAAGAAGTTGCTCCCGCAATACAGAACTCAAT
AGTAGATTGTACAGAGGTTGTGAATAGTATATCCTCCACCTTGCCGCCTGTCACCAATCACCGTGTACGAGCAACCTCACCTATACAAGCTCGGAGTACT
AGAAGGGAATTGGAAGGTAGCTCAGAAGAAGCTGCTGAGCTAACTTCCAGGATGTCTTCTCTTCAGCTTGTCAAGGCGTCCGCTAGTCCTATGGCACTGA
AGTTGCCTCATTTATTCAATTTAACACCAAACTCTGGAAAAGTGGGAAATGTTCAAAAGAAACAGATAGCTGTGGAAGTAAACCAGATGGAAAGTCTTTC
TGTAGGGAGCTCTCTGGATCAGCCAGTGTCAAACAGTCATCTGGATAACCAACTTCAAGATAATGATCAAGACTATGTTCAAAACTTGAAGAGATCCGTA
AGGGAAGCAGCTTTGTTTACACAATCATGCAGTTCGGAATCATCCCGAGGCAGTCATTCTGATAGTTCAGAACACTTCTTCGTACCTTTCTCGGCAAGCG
GGTATTCTGTTCCGGGGCCAGAAAGAATAGTTTCTTCAACAAGGAGCAAAAGATCGACTGCTTCTCAAATGGGAGGACCATCAGGGAACAGTCATGCCTC
ATATTGGTCAGGTCTTCTCACCACCTCTGTTAACGGATGA
AA sequence
>Lus10032081 pacid=23161107 polypeptide=Lus10032081 locus=Lus10032081.g ID=Lus10032081.BGIv1.0 annot-version=v1.0
MELESAMYTNCLLLGLDPNVIGLGTSSNGSPRVGLFRHSNPKLGEQLLYFILSSLRGPVQSAKDFDKVWPIFDSAQSRDFRKVNPKGHCRGVIRGFPRLL
RVAVRGRFVELLWQLSLHALREVHRRTFSADVASNPLPASLTDVAFQHAATLLPVTKEWYAACTHQVADTNQIWTDLMFFSEMHHESDGQCIYSMFSHHF
VHFLTFGCGNLNISMEQARVALERRRFLKNAEMAVQRQAMWSNLAHEMTAEFRGLCAEEAYLQQELEKLHDLRNKVKSEGEVWDDLVSSSSQNSHLVSKA
SRLWESILARKSQHEVLASGPIEDLIAHREHRYRISGSALLSAMDQSSQVPNNHSHLVDKEQSDGSYDETDSRADDRGGRVHQTVDVAEIIRRWTHALQR
IHKQSLHMAKANDGEGPDILRSGKDGSASGHAESLAATLAEHQQHLSSFQVLINQLKEVAPAIQNSIVDCTEVVNSISSTLPPVTNHRVRATSPIQARST
RRELEGSSEEAAELTSRMSSLQLVKASASPMALKLPHLFNLTPNSGKVGNVQKKQIAVEVNQMESLSVGSSLDQPVSNSHLDNQLQDNDQDYVQNLKRSV
REAALFTQSCSSESSRGSHSDSSEHFFVPFSASGYSVPGPERIVSSTRSKRSTASQMGGPSGNSHASYWSGLLTTSVNG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40740 unknown protein Lus10032081
[exp]
0 1
AT3G33530 Transducin family protein / WD... Lus10019403
[exp]
1.4 0.9230
AT5G23430 Transducin/WD40 repeat-like su... Lus10041007
[exp]
2.4 0.9292
AT1G19835 Plant protein of unknown funct... Lus10033160
[exp]
7.6 0.8594
AT3G07100 AtSEC24A, SEC24... ENDOPLASMIC RETICULUM MORPHOLO... Lus10016597
[exp]
7.9 0.9150
AT5G05970 NEDD1 NEURAL PRECURSOR CELL EXPRESSE... Lus10030162
[exp]
8.9 0.8950
AT4G16340 SPK1 SPIKE1, guanyl-nucleotide exch... Lus10030776
[exp]
11.8 0.8934
AT1G76850 SEC5A exocyst complex component sec5... Lus10011294
[exp]
15.0 0.8512
AT4G16340 SPK1 SPIKE1, guanyl-nucleotide exch... Lus10013253
[exp]
15.3 0.8881
AT1G50410 SNF2 domain-containing protein... Lus10013452
[exp]
16.1 0.8878
AT3G55480 AP-3beta, PAT2 beta-subunit of adaptor protei... Lus10023408
[exp]
16.7 0.8762

Lus10032081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.