Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13460 694 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 690 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT4G15415 686 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 667 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 596 / 0 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G09880 578 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 562 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G25510 538 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G54930 501 / 2e-174 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014619 [exp] 717 / 0 AT4G15415 604 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 690 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 687 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 685 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 652 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10036926 [exp] 651 / 0 AT3G26020 709 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10011381 [exp] 649 / 0 AT3G26020 643 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10037057 [exp] 646 / 0 AT3G26020 707 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 639 / 0 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070100 [exp] 786 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 768 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 749 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 705 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G179900 [exp] 700 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 692 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 688 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 570 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 567 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 534 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10032082 pacid=23161276 polypeptide=Lus10032082 locus=Lus10032082.g ID=Lus10032082.BGIv1.0 annot-version=v1.0 ATGATTAAACAGTTTCTCAATAGGCTTCCACGGAAGCCATCAAAGTCATCTGAGAATCGAAATGGTGGGGGAACCTCTACATCCTCATCAAACACTTCTA CTGGCTCTACCAACGAGAGATATGGGGGAATGAATGCCACCTCATCGCCTGCCGTCAATTCGAATCCAGCTCATGGGAATAAGCTCTCTCTACCAGGAAA CATAAAGCTGAATGGTAATCAACCTGCTCCTTCTTTCGAGGCCTTGCCTAGCTTCCGGGAAGTTCCAAATGCCGAGAAGCACAACTTGTTTATCAAAAAA GCAATTTTATGCTCTGTTCTATTCGACTTCTCTGATCCCACAAAGAACCTCAAGGAAAAGGACATCAAGAGGCAGACACTGGTAGAGCTTGTGGACTATG TATCTTCTGCCACTGCGAAGTTTCCTGAAGCTGTTATACAAGAACTCGTACAGATGGTCTCTGTAAATTTATTTAGACCACTCACCTCTCCACCCCGTGA GCACAAAGCCTTGGAAGCTTTTGATGTGGAAGAGGAAGAGCCATCGATGGACCCCGCGTGGCCCCATTTACAAGTTGTGTATGAATTATTATTGAGGTTT GTGGCATCACCTGAGACGGATGCAAAATTGGCCAAGAGGTACGTAGACCACTCGTTTGTTCTCAGGTTACTGGATCTCTTTGATTCAGAGGATCCAAGAG AGAGGGAGTATTTGAAAACAGTCCTGCATCGCATCTATGGAAAGTTCATGGTGCACAGGCCATTCATTAGAAAGGCAATCAACAATATCTTCTACCGGTT TATATTTGAATCTGAGAAGCACAATGGAATTGCAGAACTGTTGGAGATTCTGGGGAGTATAATCAATGGTTTTGCTCTACCTCTGAAAGAAGAGCACAAA CTTTTTCTTGTGCGAGCTCTAATTCCATTACATAAACCAAAGTGCTTACCAATGTACCACCAACAGTTGTCGTACTGCATAACCCAGTTTGTGGAGAAAG ACTGCAAGCTTGCTGATACCGTCATAAGGGGTTTGCTCAAGTATTGGCCAGTAACAAACAGTACCAAAGAGGTTTTGTTCTTGGGTGAACTGGAGGAAGT ACTTGAAGCTACTCAACCTGCAGAGTTTCAACGCTGCATGGTGCCTTTATTCCGCCAGATTAGTCGATGCTTGAGCAGTTCACACTTTCAGGTGGCAGAA AGGGCATTGTTCTTATGGAACAATGATCATATCGAACACCTAATCAAACAAAACCGCAAAATCATTCTACCGATCATCTTCCCTTCCCTTGAGAGAAACG TCCGGCGCCACTGGAACCAGGCAGTACAAAGCCTGACCCTGAATGTCCGGAAGATTTTCTCTGATACCGATCCCGAGCTTTTCGACGAATGCTTGGTCAA ATTCCAGGACGACGAAGCACGAGAGAATGAAGTCAAACTGAAACAGGAAGCCACTTGGAAACGTCTTGAAGAGATTGCTGCGATGAAAGTTTCGAGCAGC AACGAAGCTGTCCTGGTCTCTCCTAGAACTGCAAAACTCATGCGTTCGAGCTAA
AA sequence Show only first row Show all	>Lus10032082 pacid=23161276 polypeptide=Lus10032082 locus=Lus10032082.g ID=Lus10032082.BGIv1.0 annot-version=v1.0 MIKQFLNRLPRKPSKSSENRNGGGTSTSSSNTSTGSTNERYGGMNATSSPAVNSNPAHGNKLSLPGNIKLNGNQPAPSFEALPSFREVPNAEKHNLFIKK AILCSVLFDFSDPTKNLKEKDIKRQTLVELVDYVSSATAKFPEAVIQELVQMVSVNLFRPLTSPPREHKALEAFDVEEEEPSMDPAWPHLQVVYELLLRF VASPETDAKLAKRYVDHSFVLRLLDLFDSEDPREREYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFESEKHNGIAELLEILGSIINGFALPLKEEHK LFLVRALIPLHKPKCLPMYHQQLSYCITQFVEKDCKLADTVIRGLLKYWPVTNSTKEVLFLGELEEVLEATQPAEFQRCMVPLFRQISRCLSSSHFQVAE RALFLWNNDHIEHLIKQNRKIILPIIFPSLERNVRRHWNQAVQSLTLNVRKIFSDTDPELFDECLVKFQDDEARENEVKLKQEATWKRLEEIAAMKVSSS NEAVLVSPRTAKLMRSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10032082 [exp]	0	1
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	41.7	0.6530
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	41.7	0.6765
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	42.2	0.6646
AT2G46790		TL1, APRR9	TOC1-LIKE PROTEIN 1, Arabidops...		Lus10015571 [exp]	45.9	0.6638
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	51.4	0.6422
AT5G53140			Protein phosphatase 2C family ...		Lus10014926 [exp]	58.3	0.6103
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	66.8	0.6573
AT3G09440			Heat shock protein 70 (Hsp 70)...		Lus10009071 [exp]	84.9	0.6275
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	109.2	0.6206
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	155.0	0.6090

Compare expression of checked genes

Lus10032082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.