Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63170 124 / 5e-34 Chalcone-flavanone isomerase family protein (.1) AT2G26310 81 / 7e-18 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014620 [exp] 264 / 1e-89 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1) Lus10022046 [exp] 127 / 3e-35 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1) Lus10042592 [exp] 127 / 8e-35 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1) Lus10022045 [exp] 121 / 9e-33 AT3G63170 283 / 7e-96 Chalcone-flavanone isomerase family protein (.1) Lus10042591 [exp] 117 / 2e-31 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1) Lus10026174 [exp] 43 / 0.0002 AT1G53520 259 / 3e-84 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052200 [exp] 116 / 5e-31 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1) Potri.006G219600 [exp] 76 / 1e-15 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3) Potri.018G048500 [exp] 74 / 4e-15 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10032083 pacid=23161174 polypeptide=Lus10032083 locus=Lus10032083.g ID=Lus10032083.BGIv1.0 annot-version=v1.0 ATGGCTCCCGTTGCTGAGAATAGTTCTGCCAATGTTGACAGCAACATTAATCCCACTACTCCACTGGAGGAGAAACTCAATGGCTTAGCACTCAAGGATC CTGCACTTGAGAAAACATCTGAAACTCCTGAGCAGGCACCCATGGAGGAAGCGCAGAAAGAAGTAGCAGTAGCAGAAGAAAAAGATGGAGAAATTGCAGC TGAAGTTGAACCAAAAACTAGGATTTCATTTCCAGTCAAGTTGGCTGATGGGAAGCAATTGATGAGTGTTGGTTTGAGGAAGAAATCCGTACTTGGCATG GGAATCAAGATTTACACCTTTGGATTGTATTCTGACAGTCAGAAGCTGAAGGAGAATCTGAAGGCGAAAATTGCGAAGCAGGCATCCAAGGAAATGTACC AGGCGGTCATCGACGATGATTCAGCCATGACGGTGAGGCTGGTGATTGTGTTCTCTGGACTCACCATGAACATGGTCAAGAAAAGCTTCGACGAAGGCCT TGGATCATCCATCAAGAAACTAACTGGAGGGAAGAAGAACGATGAGCTTGTGAACGAGGTGATGGGTGTAGCTTCTGATGGAATCAAGCTGACTAGTGGC TCGATCATCGAAATCTCCAGGCTTCCCGGATTTGTACTTCAAACCAAAGTGATGGATGAGGTCATCAGCAAGGTTGAGAGTGAGCTTCTATGTAGGGCTT ATGTTAACATGTACCTGGGAGATGATCCATTTGACAAGGATGCCAAGGACAAATTTGGTATTTCCTTGCTTTCTCTGTTCTAA
AA sequence Show only first row Show all	>Lus10032083 pacid=23161174 polypeptide=Lus10032083 locus=Lus10032083.g ID=Lus10032083.BGIv1.0 annot-version=v1.0 MAPVAENSSANVDSNINPTTPLEEKLNGLALKDPALEKTSETPEQAPMEEAQKEVAVAEEKDGEIAAEVEPKTRISFPVKLADGKQLMSVGLRKKSVLGM GIKIYTFGLYSDSQKLKENLKAKIAKQASKEMYQAVIDDDSAMTVRLVIVFSGLTMNMVKKSFDEGLGSSIKKLTGGKKNDELVNEVMGVASDGIKLTSG SIIEISRLPGFVLQTKVMDEVISKVESELLCRAYVNMYLGDDPFDKDAKDKFGISLLSLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	0	1
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	6.1	0.9888
AT5G27260			unknown protein		Lus10007133 [exp]	7.7	0.8980
AT5G54740		SESA5	seed storage albumin 5 (.1)		Lus10040411 [exp]	8.5	0.8233
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	8.6	0.9887
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	10.5	0.9887
					Lus10024141 [exp]	12.2	0.9887
AT5G39130			RmlC-like cupins superfamily p...		Lus10003267 [exp]	13.0	0.9109
AT3G13445		TFIID-1, TBP1	TRANSCRIPTION FACTOR IID-1, TA...		Lus10031531 [exp]	13.6	0.9887
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10032793 [exp]	14.9	0.9887
AT1G31885		NIP3;1	NOD26-like intrinsic protein 3...		Lus10033447 [exp]	16.1	0.9887

Compare expression of checked genes

Lus10032083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.