Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14500 466 / 2e-165 aldose 1-epimerase family protein (.1) AT3G01590 457 / 4e-162 Galactose mutarotase-like superfamily protein (.1.2) AT5G57330 384 / 3e-133 Galactose mutarotase-like superfamily protein (.1) AT3G61610 344 / 3e-117 Galactose mutarotase-like superfamily protein (.1) AT4G23730 325 / 7e-110 Galactose mutarotase-like superfamily protein (.1) AT4G25900 306 / 2e-102 Galactose mutarotase-like superfamily protein (.1) AT5G66530 135 / 2e-36 Galactose mutarotase-like superfamily protein (.1.2) AT1G55370 43 / 0.0003 NDF5 NDH-dependent cyclic electron flow 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014621 [exp] 585 / 0 AT5G14500 490 / 2e-176 aldose 1-epimerase family protein (.1) Lus10020015 [exp] 398 / 2e-138 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 389 / 1e-134 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10041629 [exp] 372 / 6e-128 AT5G57330 479 / 4e-172 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 371 / 8e-128 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 363 / 3e-124 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 359 / 5e-123 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 355 / 1e-121 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10017549 [exp] 337 / 1e-114 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344100 [exp] 500 / 8e-179 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.006G165400 [exp] 399 / 5e-139 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 391 / 1e-135 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 390 / 3e-135 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 384 / 9e-133 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 365 / 2e-125 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.001G095300 [exp] 339 / 1e-115 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.007G023200 [exp] 147 / 4e-41 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 47 / 2e-05 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10032084 pacid=23161154 polypeptide=Lus10032084 locus=Lus10032084.g ID=Lus10032084.BGIv1.0 annot-version=v1.0 ATGTCTCGGACCCACCCAATCACTGTACACAAGGCTTCACTTTCCGCTTCTCTTGGTGGTATTCCGTCTTGTCTTCGTTGCATCAGATACTATAGGACGA CGCCCTGCGCATCTCGAACCACCACCCCCATTCCAAAGCTTCCAATGGCAGTCGCAATGTCAATGTTGCATTTGACGACGTTGGACTTCGGAGGATGCCA TCGTGGACATGAAACAAGTCGAGCAATCCGAGTCCTGGAGTGGAGGAAAGGGAAAGCTAACCCAATTGTGAGCAACTTGAGAGCGAAGCTCCGGATCAAA CCAATGCCCTTGATGAGCGTGTTTCATGATGGTGATGGATTCCCCAGGATTGTTCTCGCAGACCCTTCTGGTTCTTCAGCTGAGGTGCTTTTATATGGGG GTCAAGTTGTCTCCTGGAAGAATGAAAGAAGAGAAGAACTTCTCTTTATGAGCAGCAAGGCTATTTGGAAGCCGCCTAAGGCCATCAGAGGTGGAATACC TGTCTTCTTTCCTCAGTTTGGGAATCTTGGTTGTTTGGAGAGAAATGGATTTGCTAGGAATAGATTCTGGACAATAGACAATGATCCTTCACCTTTGCCT CCGTCGAACAATCACTCATCGGTCGATTTGTTATTGAAGTCGACTAATGAGGACATGAAGATCTGGCCGCGCAGCTTCGAGTTGCGGCTTCGTATCACTC TTAGTGCTGGCAAGCTCACTTTGATACCTCGTGTGAGAAATACGGACAATAGACCTTTCTCTTTCACATTCGCACTCAGAAACTATCTATCCGTATCAGA TATCAGTGAAGTGCGGGTCGAAGGTTTGGAAACACTTGATTATTTAGACAATCTCGTGCAGCGAAAGAGGTTCACTGAACAAGCAGATGCAATCACTTTC GATGGCGAGGTTGATAGAGTATACTTGAGCACGCCACAGAAGATCGCCATTATAGACCACGAGAAGAAGAGAACTCTCGTGCTGCGCAAGGATGGAATGC CAGATGCAGGTATGTGGAATCCTTGGGACAAAAGGGCCAAAGTAGTGCCTGATTTGGGATACGACGACTACAAGACCATGTTATGTGTTGAATCTGCAGT CACCGAAACCCCAATTGTCCTTAAACCTATGGAAGAATGGAAAGGCTATCAAGAGCTCTCGGCTGTTTCATCAAGTTACTGCAGCGGCCAGTTGGATCCT CGAAAGGTTCTTTACGGTTCCTAA
AA sequence Show only first row Show all	>Lus10032084 pacid=23161154 polypeptide=Lus10032084 locus=Lus10032084.g ID=Lus10032084.BGIv1.0 annot-version=v1.0 MSRTHPITVHKASLSASLGGIPSCLRCIRYYRTTPCASRTTTPIPKLPMAVAMSMLHLTTLDFGGCHRGHETSRAIRVLEWRKGKANPIVSNLRAKLRIK PMPLMSVFHDGDGFPRIVLADPSGSSAEVLLYGGQVVSWKNERREELLFMSSKAIWKPPKAIRGGIPVFFPQFGNLGCLERNGFARNRFWTIDNDPSPLP PSNNHSSVDLLLKSTNEDMKIWPRSFELRLRITLSAGKLTLIPRVRNTDNRPFSFTFALRNYLSVSDISEVRVEGLETLDYLDNLVQRKRFTEQADAITF DGEVDRVYLSTPQKIAIIDHEKKRTLVLRKDGMPDAGMWNPWDKRAKVVPDLGYDDYKTMLCVESAVTETPIVLKPMEEWKGYQELSAVSSSYCSGQLDP RKVLYGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14500			aldose 1-epimerase family prot...		Lus10032084 [exp]	0	1
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	1.4	0.8768
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	3.9	0.8229
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	4.9	0.8210
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	5.5	0.8246
AT3G26950			unknown protein		Lus10032012 [exp]	7.2	0.7746
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	10.2	0.7977
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	12.8	0.8199
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	13.0	0.7500
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	14.0	0.7703
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	15.2	0.7940

Compare expression of checked genes

Lus10032084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.