Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50180 535 / 0 Protein kinase superfamily protein (.1) AT3G27560 523 / 0 ATN1 Protein kinase superfamily protein (.1) AT5G40540 520 / 0 Protein kinase superfamily protein (.1) AT5G01850 396 / 3e-138 Protein kinase superfamily protein (.1) AT5G66710 289 / 2e-95 Protein kinase superfamily protein (.1) AT3G50720 253 / 1e-81 Protein kinase superfamily protein (.1) AT3G50730 243 / 5e-78 Protein kinase superfamily protein (.1) AT4G31170 228 / 2e-71 Protein kinase superfamily protein (.1.2.3.4) AT2G24360 224 / 4e-70 Protein kinase superfamily protein (.1) AT1G62400 214 / 1e-66 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035233 [exp] 686 / 0 AT5G50180 567 / 0.0 Protein kinase superfamily protein (.1) Lus10025154 [exp] 392 / 6e-136 AT5G01850 523 / 0.0 Protein kinase superfamily protein (.1) Lus10025236 [exp] 372 / 6e-128 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10026034 [exp] 270 / 2e-88 AT5G66710 342 / 1e-115 Protein kinase superfamily protein (.1) Lus10020374 [exp] 232 / 6e-73 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10011173 [exp] 211 / 2e-64 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10020018 [exp] 209 / 2e-64 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015436 [exp] 211 / 5e-64 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 207 / 7e-63 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343900 [exp] 575 / 0 AT5G50180 577 / 0.0 Protein kinase superfamily protein (.1) Potri.017G065500 [exp] 572 / 0 AT5G50180 574 / 0.0 Protein kinase superfamily protein (.1) Potri.016G134900 [exp] 400 / 7e-140 AT5G01850 487 / 3e-174 Protein kinase superfamily protein (.1) Potri.018G001800 [exp] 230 / 2e-72 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.018G001900 [exp] 230 / 3e-72 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 228 / 1e-71 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G279900 [exp] 226 / 9e-71 AT2G24360 642 / 0.0 Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 209 / 7e-65 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 209 / 1e-64 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G179457 [exp] 207 / 2e-63 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10032086 pacid=23161300 polypeptide=Lus10032086 locus=Lus10032086.g ID=Lus10032086.BGIv1.0 annot-version=v1.0 ATGATGATCAATTGTAAACAAGATTTCAATTTGGAAGATAGGTTGTTGATTGATCCCAAGCTTCTATTTGTTGGACCAAAGATTGGTGAAGGTGCTCATG CCAAAGTTTATGAGGGAAAGTATAAGAATCAAACTGTGGCCATTAAAGTAGTTCACAGAGGAGAAACCCCAGAGGAGATTGCCAAGAGAGAAGGACGGTT TGCAAGAGAGATTGCAATGTTGTCCAAAGTAAAACACAGAAACCTAGTCAAGTTCATTGGTGCTTGCAAAGAACCAGTCATGGTGATAGTTACAGAGCTA CTGTTGGGTGGAACACTGCGAAAATACTTGCTGAACTTGCGGCCTAGGTGCTTAGAGACTCATGTCGCGATTGCTTTCGCGCTTGATATTGCTCGTGCAA TGGAATGCTTACACTCTCACGGGATCATTCATCGTGATCTGAAACCTGAGAACTTGCTCTTGACAGCAGACCACAGAACAATAAAGCTTGCAGATTTCGG TTTAGCGAGAGAAGAGTCATTAACTGAGATGATGACTGCCGAAACAGGAACATATCGTTGGATGGCCCCCGAGCTTTACAGCACGGTAACACTAAGGCAA GGCGAGAAAAAGCACTATAATCACAAGGTGGATGCTTACAGTTTTGCAATTGTGTTGTGGGAGCTCATCCACAACAAGTTGCCTTTTGAAGGCATGTCAA ATCTGCAGGCAGCATATGCCGCTGCATTTAAGAATTTTAGACCGAGTGCCGAGGACCTACCTGAGGACCTAGCTCTAATAGTGACCTCATGTTGGCAAGA GGATCCAAATGCCAGACCGAATTTCAGCGAGATCATACAGATGCTTCTGTGCTACCTCTCAGCCATCTCACCGACAGTAGCGCCAGCAATCCCAGCTCGA ATGTATTCCTCAGAGAACAAAGTGCTGGCACCTGAGTCGCCCGGCGAGAGTTCACTCATGGCTGCAAGAGATGATCCAGGTGACACCCCCAAAACCCAGA ATGAAGACCAGCCAAGTAAAGGTTTCTTCTTCTGCTGTTAG
AA sequence Show only first row Show all	>Lus10032086 pacid=23161300 polypeptide=Lus10032086 locus=Lus10032086.g ID=Lus10032086.BGIv1.0 annot-version=v1.0 MMINCKQDFNLEDRLLIDPKLLFVGPKIGEGAHAKVYEGKYKNQTVAIKVVHRGETPEEIAKREGRFAREIAMLSKVKHRNLVKFIGACKEPVMVIVTEL LLGGTLRKYLLNLRPRCLETHVAIAFALDIARAMECLHSHGIIHRDLKPENLLLTADHRTIKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQ GEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNFRPSAEDLPEDLALIVTSCWQEDPNARPNFSEIIQMLLCYLSAISPTVAPAIPAR MYSSENKVLAPESPGESSLMAARDDPGDTPKTQNEDQPSKGFFFCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	0	1
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	7.5	0.7031
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	13.3	0.6418
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	23.1	0.6316
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	23.6	0.6164
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	23.8	0.6694
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10000200 [exp]	27.2	0.6033
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	28.5	0.5991
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	33.0	0.6129
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	36.7	0.5841
AT1G31440			SH3 domain-containing protein ...		Lus10034755 [exp]	38.7	0.6034

Compare expression of checked genes

Lus10032086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.