Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 860 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 715 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 704 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 703 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 615 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 559 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039094 [exp] 1139 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 1072 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 1035 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 972 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 955 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 951 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 951 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 849 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10035232 [exp] 831 / 0 AT3G45140 584 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015500 [exp] 1004 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 998 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 993 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 988 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 968 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 749 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 741 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 729 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.005G032700 [exp] 601 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032400 [exp] 600 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10032087 pacid=23161087 polypeptide=Lus10032087 locus=Lus10032087.g ID=Lus10032087.BGIv1.0 annot-version=v1.0 ATGCTGAAACCGCCACAGCTCCTGAGCAGCAGCCGGCGGCCAGTCTTTATCCCGGCGAAGAGTACTGCATCCGGTGGCGTCGGCCATGGACATAAATATG GTCACTTGCCATCTACATTGCTGTCGCCATTGAATAACACTCGACTGGCCACGTGGTTGGCCCGTTGTGGTAATAATATGTCTCTGGCCGGCAGAGAAGT CGTCGGCTCCGGTGAGGCTGTAAAAGTGAAGGTGGTTGTGACGGTGAAACAGCCCGATGAGGTGCTCTCCAAGATTGGAATAGGGATGGAAGATATCTCT AGCTTCTTTCGCAAAACCTTCCGGCTCCAAATCATTAGCACACAATTCGATCTCGAAACGGCATTAGAGCAACCAAGTGTGGAAGCAGGAGCAAAGAAAA TCAGTGAGGACGAAGAAGAGATTAAGTACGAAGCAGAGTTTAAAATCCCTGGCCAGTTTGGAGAAGTGGGTGGTGTCGTCGTCGTGAACGAGCACTCTAA TGAGATGTTTGTCAAAGACATCGTTCTTCATGACGATGTTACTGGTCCGGTCAATTTTTACTGTGACTCTTGGCTTCATTCCAAGTCTCATAACTCGCTT AAGAGGATTTTCTTCACCACCAAGTTGTACTTGCCGTCGGAGACCCCGGATGGACTGACTAGGTACCGGAAAGAAGAGCTCAATATTCTACGAGGCAATG GCCAAGGAAAGCGCAAACAAGGCGAAAGGATTTACGACTACGATGTCTACAACGATCTCGGCGACCCCGATGAGAATTCCGACCTCGCCAGACCAGTCCT CGGTGGAAAAACAAACCCATATCCTCGCCGGTGCCGGACTGGGCGGCCACGAACTAAATCCGATCCGAAGTCGGAGACAAGGAGTGGAGGAGAATTGTAC GTCCCACGAGACGAGAAGTTCTCGGAGATGAAGAACAAATGTTTCAATCGGAATACGTTCTCGTCAGTGCTCCGTGCAGTGGTGCCCGCGGTGGAGGCCG TTTGGATGGAGTATAGAGGGAATCGATCTCAAGTCCTCAATTCTTTGCCTTGTCTTTCAGGGGACAGATTCTTCTGCTTGGAGGACGATCAATTTGGTAG GCAGACTCTTGCTGGCGTTAACCCCAGCTGCATAGAATTGGTTAAGGAATGGCCACTGAAGAGTAAGCTTGACCCTGATATCTATGGTCCACCGGAATCA GCAATTACAACTGCAGTTGTTCAAAGGCAAATAGGAGGTTTCTTGACAGTTGAGGAGGCTGTAAAGCAAAAGAAGCTATTCATCCTGGATTACCATGATC TGTTCCTACCGTTTGTGAGCCTTGCAAGGAAGCAAGAAGGAACTGTACTTTACGGGTCAAGAGCATTGTTCTTTCTCACCCCAGTTGGTACGTTGAAGCC TGTCGCAATTGAGCTTTCCAGGCCCCCAATGGATGGCAAGCCGCAGTGGAAAGAAGTCTATACACCGACTTTTTGTTCTTCTACCGATCAGTGGCTGTGG AAGCTGGCCAAAACCCACGTCCTTGTAAATGATGTTGGCTATCATCAACTAGTTAGCCATTGGCTGAGAACGCATTGCTGCACAGAACCATACATAATTG CAACTAATCGCCAACTTAGTGCCATGCACCCAGTCTATAGACTCTTGCTACCTCACTTTCGTTACACGATGGAGATCAATGCTTTAGCTCGCCAAGCTTT GATCAATGCAGGTGGCATAATTGAAACTTGCTTTGCTCCTCTCAAGTATGCCGTCCAGCTTAGTTCTGCATGTTACGCCCAACACTGGCGCTTCGACTAC GAGGCACTTCCAAAGGACCTAATCAGGCGGGGCATGGCTGTTGAAGACCCTTCTGCACCGCATGGCCTAAGATTAACAATCGAGGACTACCCATATGCGA ACGACGGGCTAATTATGTGGGACGCCTTGGAGAAATGGGTTACCGACTATGTCAATCATTACTATCCAGACCCAACCCTCGTAGCTTCCGAGTCAGAGCT TCAAGCCTGGTGGACTGAGATTCGTACGGTTGGCCATCAGGACAAGAAGGACGAGCCATGGTGGCCAAAACTTGAAACCCCTCGGGATCTCGTGGGAATC CTTACGACGATAATGTGGGTTACATCAGGTCACCATGCCGCAGTGAACTTCGGACAGTATACATTCGGAGGTCACCTCCACTTCAGGCCAACAATCGGGA GAAAGAAGATGCCGAATGAAGATCCAACCGACGAAGAGTGGAACAAGTTCTTAGAGAAACCCGAAACGGTGCTCCTCGAGATGTATCCGTCACAGTTGCA GGCATCAACGGTGCTGGCCGTTTTGTACGTTTTGTCTTTCCACTCCAGTGATGAACAGTACATGGGGAAGGAGATTGACCGAGCATGGGCCGATGACCCG GTAATCAAATCGGCTTTCGAGAAGTTCAGCGGGAGGTTGATGGAGCTGGAAATGGAAATCGACGCACGTAATGCAAACCCGAATTTGAGAAACCGAAATG GCGCTGGGGTTCTCCCGTATGAGCTTCTGAAGCCGTTTTCTGAGCCTGGTGTCACTGGGAAAGGTGTTCCTTACAGTATCTCCATCTAA
AA sequence Show only first row Show all	>Lus10032087 pacid=23161087 polypeptide=Lus10032087 locus=Lus10032087.g ID=Lus10032087.BGIv1.0 annot-version=v1.0 MLKPPQLLSSSRRPVFIPAKSTASGGVGHGHKYGHLPSTLLSPLNNTRLATWLARCGNNMSLAGREVVGSGEAVKVKVVVTVKQPDEVLSKIGIGMEDIS SFFRKTFRLQIISTQFDLETALEQPSVEAGAKKISEDEEEIKYEAEFKIPGQFGEVGGVVVVNEHSNEMFVKDIVLHDDVTGPVNFYCDSWLHSKSHNSL KRIFFTTKLYLPSETPDGLTRYRKEELNILRGNGQGKRKQGERIYDYDVYNDLGDPDENSDLARPVLGGKTNPYPRRCRTGRPRTKSDPKSETRSGGELY VPRDEKFSEMKNKCFNRNTFSSVLRAVVPAVEAVWMEYRGNRSQVLNSLPCLSGDRFFCLEDDQFGRQTLAGVNPSCIELVKEWPLKSKLDPDIYGPPES AITTAVVQRQIGGFLTVEEAVKQKKLFILDYHDLFLPFVSLARKQEGTVLYGSRALFFLTPVGTLKPVAIELSRPPMDGKPQWKEVYTPTFCSSTDQWLW KLAKTHVLVNDVGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPVYRLLLPHFRYTMEINALARQALINAGGIIETCFAPLKYAVQLSSACYAQHWRFDY EALPKDLIRRGMAVEDPSAPHGLRLTIEDYPYANDGLIMWDALEKWVTDYVNHYYPDPTLVASESELQAWWTEIRTVGHQDKKDEPWWPKLETPRDLVGI LTTIMWVTSGHHAAVNFGQYTFGGHLHFRPTIGRKKMPNEDPTDEEWNKFLEKPETVLLEMYPSQLQASTVLAVLYVLSFHSSDEQYMGKEIDRAWADDP VIKSAFEKFSGRLMELEMEIDARNANPNLRNRNGAGVLPYELLKPFSEPGVTGKGVPYSISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10032087 [exp]	0	1
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	10.2	0.7553
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	17.1	0.7505
AT3G05610			Plant invertase/pectin methyle...		Lus10031469 [exp]	17.7	0.7551
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	20.1	0.7132
AT3G62650			unknown protein		Lus10010026 [exp]	21.0	0.7160
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	23.4	0.7512
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	28.5	0.7418
AT2G48060			unknown protein		Lus10029968 [exp]	32.5	0.6776
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	33.5	0.7014
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10041177 [exp]	38.7	0.6790

Compare expression of checked genes

Lus10032087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.