Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27530 1062 / 0 MAG4, GC6 MAIGO 4, golgin candidate 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035230 [exp] 1543 / 0 AT3G27530 1204 / 0.0 MAIGO 4, golgin candidate 6 (.1) Lus10000216 [exp] 598 / 0 AT3G27530 400 / 3e-132 MAIGO 4, golgin candidate 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G343500 [exp] 1266 / 0 AT3G27530 1249 / 0.0 MAIGO 4, golgin candidate 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04869 [flax] [poplar] Uso1_p115_head Uso1 / p115 like vesicle tethering protein, head region PF04871 [flax] [poplar] Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region
Representative CDS sequence Show only first row Show all	>Lus10032089 pacid=23161140 polypeptide=Lus10032089 locus=Lus10032089.g ID=Lus10032089.BGIv1.0 annot-version=v1.0 ATGGATTTAGTTTCTGGCTACAAGGGTATGGTTGGGCTTGTATTTGGTAATGAGAATTCTTCTTCAAATGAAGATAGCTATGTGCAACGGTTGCTCGACC GGATCAGCACTGGTTCCTTGGCAGATGATAGGAGGACAGCCTTGGTCGAGCTTCAATCTGTTGTAACAGAAAACCGTGCTGCTCAGCTAGCATTTGGGGC TACGGGATTCCCTGTTCTGATGGGTATCTTAAAGGAGGAGAGAGATGATGTTGAGATGATCCGAGGCACCCTAGAAACTATAGTAGGTGCTTTGACCCCT CTAGATCGATCAAAAGGGAAGAATGAGGTCCAACCAGCACAAATGAATACTGATATGCTCTCAAGTGATGCTGAAAACATATCATTGCTTCTGGGTTTAT TGTCAGAAGAGGATTTCTATATACGCTATTACACCCTCCAAATCTTAACAGCTCTTCTAGTGAATTCTCGAAACAGAGTTTGCTCCTGGTTATCCTTGAA TGCTCTTGCTGAGTTCCTTTTCAGGTTACAGGAAGTCATTTTGACCATTCCTCGAGGTATCACTTGGCTAATGGATATGTTGATGGATCGAGAGGTTATA CGGAACGAGGCTTTGCTGCTTCTTACTTATCTCACTCGTGAAGCCGAGGAGATACAAAAAATTCTTGTATTTGAAGGTGCATTCGAGAAAATATTTAGCA TAATCAAAGAGGAAGGTGGTTCTGAAGGTGGTGTTGTGGTACAGGACTGTCTGGAATTATTAAACAATCTACTCCGCAACAATACATCGAATCAGATACT GCTGAGGGAGACCATTGGATTTGATGGCTTAATTTCAATGTTGAGATTGAGAGGAGGTGCTTACAGCTTTACCCAACAGAAGAGTGTGCTTACAACGATT AATTTGCTATTGGTGGGAGGTTCTGAAGCTGACACTGGGAAAGATGCAAATAAGCTGACTAATAAAACCATCCTGGTTCAGAAAAAGGTGCTTGATTACC TTTTGCTGTTGGGTGTTGAAAACCAATGGGCTCCAGTTGCTGTCCGTTGTGATGCATTGAGATGCATTGGTGACTTAATTACTGGTCATCGAGGGAATCT AGATGCCCTAGCTAGCAAAGTTCTTGGTGACGGCCAACAAGTAGAACCTGCTCTGAATTCTGTTCTTCGGATCATTTTGCGGGCATCCAGCATGCAGGAG TTCATTGCAGCTGACCATATCTTCAAAAGATTTTGTGAGGGTAATTGTGATGGTCAGACTATGTTAGCTTCGACATTAATCCCGCAGCCGTATTCCATGA CTCATGCTTCAATTGAAGATGATGTGAACATGTCATTTGGCAGTATGATTTTGCATGGTCTTACATCGAGTGAAACTAATGGTGATTTAGAGACTTGTTG CAGAGCAGCTAGTGTGTTGTCACATGTGCTGAAGAACAATATGCAGTGCAAAGAAAGGGTTCTAAGGATAGAACTGGAGTCATCCTCAGGATTGGGTGAT TCAGAGCCATTGATGCACGTTATGGTAAAGTATTTAGCTCTTGCCTCTGGTGCGAAACACAAAGAAGGAAAACCAAGTAAATCAGGCAACTTATATATTC AAGCAATTATCCTGAAGTTGTTGGTCACTTGGATGGCCGACTGTCCCGCTGCTGTTGAATGCTTCCTAGATCTACGTCCCCATTTGTCATATCTGCTTGA GCTTGTCTCAGATCAGTCTGCCACTGTAACTGTGAGAGGCTTAACGGCGATTCTCTTGGGAGAGTGTGTTATTTACAACAAGTCTACTGAGGCCAGAAAA GATTCTCACACAGTAGTTGATGGCATAAGTCAGAAGGTGGGGCTGACATCATATTTCCTTAAATTTGATGAAATGAAGAAAAGCTTCCTTTTCTCGTCTG AGAAATCCACAACGTCTCATAAACCATTAACAAGATCACCTGCTGCTAGTATGGCGGAGATTGAAGATGTTGATGAGCAGCATTCCTCCGATCAAAAGAG TGACGACCATCCCATTCTCTCATCGATTCGCCCGAAAAACCAGGTGGCAGTTGTGCCAGCAGAGATGGAACAGAAGAGTGGCGAAACTGACAAGGACTAT GTTAAGAGACTCAAGTCTTTTGTTGAGAAACAATGCTCCGAGATACAGAATCTTCTCGGACGGAATGCAACATTGGCAGAGGATCTGGTGAAAATAGGTG GAGGCGAGTCTTCCTACTCCGAGCAAAGAGTTAGGTCGGGATCTGAAAGGGTGCAGACAGAGACACTTCACCGAGATCTCAAGGAAGCAAACCAAAGGAT AGAGATGCTGAAGGCTGAGAACACCAAACTCGAATCGGAAGCATCAATGTACCAGAATTTAGCTGGGAAGGTGGAGTCAGACCTGAAGAGTCTATCAGAC GCTTACAACAGCCTTGAACAGGCGAATTACCAGTTGGAGAAGGAGGTAAAAGCTTTGAGAAACGGAGGAGGATTAGATGTGGAGGCGATACAGGCGGAAG CAAGAGAGGAAGCGCTGAAGGAAAGCGAAGGGGAGCTGAATGATTTGCTGGTGTGCTTGGGTCAGGAGCAGAGCAAGGTGGAGAAGCTGAGCTTAAAGTT AGCAGAACTGGGAGAGGATGTTGATGAACTGCTGGATGGCATTGGTGATGATTTGGGACTTCCGGTGGATGGCGACGAAGATGCCGACTAA
AA sequence Show only first row Show all	>Lus10032089 pacid=23161140 polypeptide=Lus10032089 locus=Lus10032089.g ID=Lus10032089.BGIv1.0 annot-version=v1.0 MDLVSGYKGMVGLVFGNENSSSNEDSYVQRLLDRISTGSLADDRRTALVELQSVVTENRAAQLAFGATGFPVLMGILKEERDDVEMIRGTLETIVGALTP LDRSKGKNEVQPAQMNTDMLSSDAENISLLLGLLSEEDFYIRYYTLQILTALLVNSRNRVCSWLSLNALAEFLFRLQEVILTIPRGITWLMDMLMDREVI RNEALLLLTYLTREAEEIQKILVFEGAFEKIFSIIKEEGGSEGGVVVQDCLELLNNLLRNNTSNQILLRETIGFDGLISMLRLRGGAYSFTQQKSVLTTI NLLLVGGSEADTGKDANKLTNKTILVQKKVLDYLLLLGVENQWAPVAVRCDALRCIGDLITGHRGNLDALASKVLGDGQQVEPALNSVLRIILRASSMQE FIAADHIFKRFCEGNCDGQTMLASTLIPQPYSMTHASIEDDVNMSFGSMILHGLTSSETNGDLETCCRAASVLSHVLKNNMQCKERVLRIELESSSGLGD SEPLMHVMVKYLALASGAKHKEGKPSKSGNLYIQAIILKLLVTWMADCPAAVECFLDLRPHLSYLLELVSDQSATVTVRGLTAILLGECVIYNKSTEARK DSHTVVDGISQKVGLTSYFLKFDEMKKSFLFSSEKSTTSHKPLTRSPAASMAEIEDVDEQHSSDQKSDDHPILSSIRPKNQVAVVPAEMEQKSGETDKDY VKRLKSFVEKQCSEIQNLLGRNATLAEDLVKIGGGESSYSEQRVRSGSERVQTETLHRDLKEANQRIEMLKAENTKLESEASMYQNLAGKVESDLKSLSD AYNSLEQANYQLEKEVKALRNGGGLDVEAIQAEAREEALKESEGELNDLLVCLGQEQSKVEKLSLKLAELGEDVDELLDGIGDDLGLPVDGDEDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	0	1
AT2G45320			unknown protein		Lus10000786 [exp]	1.0	0.9357
AT1G67550		URE	urease (.1)		Lus10015814 [exp]	2.4	0.9351
AT4G17486			PPPDE putative thiol peptidase...		Lus10013657 [exp]	4.0	0.9312
AT5G26990			Drought-responsive family prot...		Lus10013990 [exp]	4.1	0.9078
AT5G13500			unknown protein		Lus10036037 [exp]	5.0	0.9281
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	5.2	0.9314
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10002689 [exp]	8.8	0.9143
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	9.9	0.9194
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	11.7	0.9008
AT1G75510			Transcription initiation facto...		Lus10033190 [exp]	12.4	0.9015

Compare expression of checked genes

Lus10032089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.