Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02330 926 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 500 / 9e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 501 / 9e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 482 / 3e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 468 / 9e-153 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 466 / 5e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 451 / 7e-147 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G63370 451 / 4e-146 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 444 / 2e-142 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 441 / 3e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014594 [exp] 1488 / 0 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015414 [exp] 519 / 2e-171 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 514 / 2e-169 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 502 / 1e-163 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 468 / 1e-152 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 469 / 3e-151 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 455 / 1e-148 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030249 [exp] 448 / 6e-147 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 446 / 4e-145 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G111300 [exp] 1092 / 0 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 536 / 3e-178 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 533 / 3e-176 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 528 / 5e-174 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 509 / 2e-166 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 483 / 1e-158 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 486 / 2e-158 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 477 / 4e-156 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 468 / 8e-152 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 462 / 2e-150 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032091 pacid=23161196 polypeptide=Lus10032091 locus=Lus10032091.g ID=Lus10032091.BGIv1.0 annot-version=v1.0 ATGCCCCAGAGGGACGTCGTTACTTATAATGCCATGATTTTCGCGTATGCTGGCTGCGGTAAGATGGGGGTTGCAAGGGATCTTTTCGACGAGATGCCTG CCCGAGATGTTGTGTCGTGGAATTCCATGATTTCCGGGTTTTTGCAGAACGGGGAGCATGGAAAGGCAATTGACGTTGTCTTGGAGATGGGGAGATCAGA TGTGAAATATGACAGAACAACTTTTGCTGTTGCTCTAAAAGTTTGTGCTCTTTTAGAAAACTGTTACGTGGGTGTTCAGCTTCATGGACTGGCAGTTCGG CTGGGACTCGTTAGTGATGTCTATACAGGTAGTGCTATGCTGGATATGTATGCAAAATGTAACAGGTTAGATGATTCGTTTAAGGTATTCAGAGAGATTC CAGAGAAAAACTGGGTTTCGTGGAGTGCCATGATTGCTGGTTTCATTCAAAACAATAGATTGATCGAGGGTTTAGAGCTGTTTAACGATATGCAAAGGAC TGGAATAGGTGTTAGTCAATCTATCTACGCCACGGTTTTCAGATCATGTGCAGGGTTATCTGCATTGGAAATCGGTTCTCAATTTCATTGCCACTCGATC AAAAGCGATTTTGGAGCAGATGTGATAGTGGGAACTGCAACACTGGACATGTATTCAAAATGTGGAAGTATGGGAGATGCTTATAAGCTATTTAACTCGA TGCGAAGGCATAATTTGCAGTCATATAATGCTATTATTGTTGGGTACGCGAGAAGTGGGCAAGGTTCTCAAGCTATGCTTTTATTTCGACGCCTGTTGAA GTCTGGCCTTGGTTTCGATGAAATAAGTCTATCCGGAGCATTCTGTGCTTGTGCATCGATTAGAGAAAAGTCGTTGGGACTCCAATTGCATGGGTTGACA ATGAAGACTGTTTTTAACACAAATGTTTGTGTGGCGAATGCTGTTCTTGACATGTACGGTAAATGTGGAGCTTTAGTGGAAGCTACCCATGTATTTGATG AGATGATGTATCGAGATGCTGTATCCTGGAACGCCATTATTGCAGCTAATGAGCAGAATGGCAGCGAAGAAGAAGACACTCTTCCAGTTTTCGCGTCAAT GCTCAGTTTCGGAATGGAACCTGACGAATTCACCTATGGCAGTGTATTGAAAGAATGTGCAGGGAAGCAAGGTCTAAACAGTGGAAGGGAAATCCACGCC AGAATCGTCAAATCTGGACTGGGGTGGGAACCATTTGTCGGGGGAGCTCTCGTTGACATGTACTGCAAATGTGGAGTGATAAAAGAGGCGGAGAAAATTC ACAACCGAACTTATCCACAGTCTATGGTTTCGTGGAACGCAATTGTTTCCGGATTCTCGCTGCTGCAACAGAGCGAGGAAGCTCAAAGCTTTTTTCTTCA CATGTTGGAGGCCGGTGTAAAGCCTGACAATTTCACTTATGCGACGGTTCTTGATACCTGTGCCGACTTAGCTACAGTTGGTTTGGGAATGCAGATTCAT GGCCAGGTCATAAAGCAGCAACTGCAGTCTGACGTGTACATATCCAGTACACTAGTGGACATGTATTCCAAATGTGGAAAGCTGCTAGATTCAGAGCTAA TGTACGAGAAAGCACCTAAGAAGGACCTTGTGGCATGGAACAGTCTGATATGTGGATATTCACAACACGGTCATGGAGAGAAGGCTCTGGAAATCTTCGA GATGATGAGACCCGAGAATGTAAATCCGAACCATACAACTTTTCTGTCCGTTCTTCGAGCATGTGCACATAAAGGACTTCTTGATACAGGGTTGCTCTAT TTTGACATTATGCACACCGAGTATCGTTTAGATCCTGAACTGGAGCATTATTCATGCATTGTCGATCTGTTAGGGAGGTCGGGGAGGACAGTTGATGCTT TGAATGTGATTGAAAAAATGCCGTTTGAAGCTGATGCTGTTATTTGGAGAACTCTGCTAAGCATTTGCAAGTTACATGGAGAGGTCGAGATTGCAGAAAA GGCTGCAACTTCGATATTGCGATTAGAGCCAGATGACTCTTCTGCTTATATTCTTCTGTGCAATGTTTACGCTGATGCTGGGATGTGGGGTAAGGTTGGA GAGATGAGGAGGACAATGAAGCAGAATAGGCTGAAGAAAGAACCGGGTTGCAGCTGGATTGAGATTAAGGATGAAGTGCATCCATTTGTTAGTGGAGACA AGTCGCAATCGAGATGGGAAGAGATATATGAGAACATCGGTATGCTGGTTAATGAGATGAAATGGGATGGATATATACCAGATGATCTGTTCAGAGATGA AGTAACTAGGGTTCATGGAGACACCAGAGTGGATGGAGATGCTCAGGATGACCAATTCATCGTGGATGGATAA
AA sequence Show only first row Show all	>Lus10032091 pacid=23161196 polypeptide=Lus10032091 locus=Lus10032091.g ID=Lus10032091.BGIv1.0 annot-version=v1.0 MPQRDVVTYNAMIFAYAGCGKMGVARDLFDEMPARDVVSWNSMISGFLQNGEHGKAIDVVLEMGRSDVKYDRTTFAVALKVCALLENCYVGVQLHGLAVR LGLVSDVYTGSAMLDMYAKCNRLDDSFKVFREIPEKNWVSWSAMIAGFIQNNRLIEGLELFNDMQRTGIGVSQSIYATVFRSCAGLSALEIGSQFHCHSI KSDFGADVIVGTATLDMYSKCGSMGDAYKLFNSMRRHNLQSYNAIIVGYARSGQGSQAMLLFRRLLKSGLGFDEISLSGAFCACASIREKSLGLQLHGLT MKTVFNTNVCVANAVLDMYGKCGALVEATHVFDEMMYRDAVSWNAIIAANEQNGSEEEDTLPVFASMLSFGMEPDEFTYGSVLKECAGKQGLNSGREIHA RIVKSGLGWEPFVGGALVDMYCKCGVIKEAEKIHNRTYPQSMVSWNAIVSGFSLLQQSEEAQSFFLHMLEAGVKPDNFTYATVLDTCADLATVGLGMQIH GQVIKQQLQSDVYISSTLVDMYSKCGKLLDSELMYEKAPKKDLVAWNSLICGYSQHGHGEKALEIFEMMRPENVNPNHTTFLSVLRACAHKGLLDTGLLY FDIMHTEYRLDPELEHYSCIVDLLGRSGRTVDALNVIEKMPFEADAVIWRTLLSICKLHGEVEIAEKAATSILRLEPDDSSAYILLCNVYADAGMWGKVG EMRRTMKQNRLKKEPGCSWIEIKDEVHPFVSGDKSQSRWEEIYENIGMLVNEMKWDGYIPDDLFRDEVTRVHGDTRVDGDAQDDQFIVDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02330			Pentatricopeptide repeat (PPR)...		Lus10032091 [exp]	0	1
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10034355 [exp]	14.3	0.7815
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10039741 [exp]	16.2	0.6552
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	18.0	0.7705
AT4G14050			Pentatricopeptide repeat (PPR)...		Lus10040634 [exp]	21.5	0.7585
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	21.8	0.6791
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	24.0	0.7672
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	27.0	0.7674
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	28.3	0.7249
AT4G14850		MEF11, LOI1	lovastatin insensitive 1, Pent...		Lus10006123 [exp]	29.7	0.7396
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10012961 [exp]	31.3	0.6621

Compare expression of checked genes

Lus10032091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.