Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02490 553 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15980 542 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48250 276 / 9e-84 BIR6 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 71 / 2e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G37230 67 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 67 / 3e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62540 64 / 2e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 63 / 4e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 62 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16010 61 / 2e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019474 [exp] 297 / 1e-91 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043322 [exp] 288 / 5e-89 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021250 [exp] 87 / 2e-17 AT5G06400 988 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034721 [exp] 75 / 9e-14 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021645 [exp] 74 / 2e-13 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027465 [exp] 71 / 1e-12 AT1G55630 569 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011464 [exp] 69 / 8e-12 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10003575 [exp] 66 / 4e-11 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 66 / 4e-11 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G108100 [exp] 703 / 0 AT3G02490 604 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G108000 [exp] 697 / 0 AT3G02490 623 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G084800 [exp] 312 / 2e-97 AT3G48250 715 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G077400 [exp] 82 / 5e-16 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G200800 [exp] 76 / 7e-14 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 65 / 9e-11 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G131400 [exp] 64 / 2e-10 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 64 / 3e-10 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G084000 [exp] 62 / 7e-10 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G180000 [exp] 62 / 9e-10 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032092 pacid=23161102 polypeptide=Lus10032092 locus=Lus10032092.g ID=Lus10032092.BGIv1.0 annot-version=v1.0 ATGAGAAACTCATGGCGATCGCTTCTTCTCCGCACCAACACCCGATCTTCGCTCAACGTATCATCTATTTCTCCCCATCTCCATCGCCAGGTAAACTCCT CTTGTTCGCCGCATCTCTCTTCCCTTCGTACGATCCCCAGCTACCTCCGTCCCTTAAGCGGCCTGCCCAGCTCCGTTAACTCTAGAAATGTTCGCCATTT CTCATCGGACCCATTAGTGGAACCGTCCAGCAAGGATTCGGATCCCGAGCTGCTTGCTGTGTCGAATGTTTTCACTAATTTCAGCGACGTCGGTGATATT AACAGGGAGATGGAGACGAGTGGTGTGGTCATTAGCCATGATTTGGTTTTGAAAGTGTTGAAGTCTCTTCAATCGAATCCTGATGCTGCTCAGCGGTTTT TCGGTTGGGTTCTGGACAAGGATGGCCAGAAGTTGAGTTCCAAATCGTATAACTGGATGCTAGGGATTCTAGGGACGAACGGTTGCACGGTGGAGTTCTG GGATTTGGTAGAGACGATGACGAAGAAAGGTTATGGTATGTCTAAGGTTACACACGATAGAGCGAAGGAGAAATTCTTGAAAGAAGGACTCAAGAACGAT TTGGCGAAGTTGAATACGGTTTTCGCATCTGGATCTACTGATGATTCTACTGAAAAGCTTGGCGTGAGGATTGGCAGGATCGTCAGGAATAATGTTTGGT CTGAGGACGTTGAGAAAGAAATAAAGGATCTGAATGTCTCATTTTCTGCTGAATTGGTGATGACCGTGGTGGATAGTTCGGCGATGGACCCGATGAAAGC GTTGATCTTTTTCAGATGGGTTGATGAGAGTGGATTGTTCAACCATGGCCAGAGGAGTTACAATGCAATTGCTAGAGTTTTGGGGAGAGAGGATTGTAAT GACAGATTCTGGAAAGTTACAGAAGAAATGAAGAGCAAGGGTTACGAAATGGAAGTTGAGACCTTTGATAAGGTGCTGGGACGCTTTATTAACCGAAAAA TGAACAAAGAATCGGTGGACTTGTATGAGTTTGCTATGGCGGGTAGGAACAAACCATCGTCTTCTCGTTGCGTCTTTATTTTGAGAAAGATAGTGGCAGC CAAGCAGCTCGACCTTGATCTATTCTCGAGGGTTTTGAAGATCTATACCAAATATGGTGATGCATTAACAGACTCTATGCTCGATACAGTTCTCAAAACA CTTACTAGTGTAGGTAGATTCGAAGACTGCACCAAGATCCTGAAAGAAATGAAAGAATACGGGTTCACTGCTGGCGGTAATCTGCAGAGTAAGATTGCTT TCAGACTTGGTAGCTCCCTCAACAAGAAGGAAGCAAGTGCATTTGTCGATCACATGGATCTAGATAAGAAGGCGTGGATATCATTGATCAAAGGCCATTG TACATCTGGCGATCTCGAAGCAGCATCTGCCTGTTTTAAACAGATGGCGGCTTCCAAACAAGGTATCTCCGGTGCTAGTTATGCCTTTGAGTCGTTGGTG AAGGCGTATTGTTACAAGAACCGAGCTGCAGATGTGTGCAAGCTTCTACACGAATGTGCCGATAAAAATGGATTGAAGCCCCTTCATACTACTTACAAGC TACTGATAAGCAAGTTGCTGGCTCGGCAGGACGGATTTAAGGATGCCTTGAGTGTTGTGGATCGGATGAGAAGCGATGGATTCCCGCCTTTTGTGGAACC GTGTATAAGGTACTTGTCTGAGCAGGGAACAGGCGACGATGGTGTCGAGTTTTTGAAGTCGACCACTAAAAAGAAATTCCCAGCTACTCCTCTGGTGCTC CGAGTTTTTGAAGGTTACATTAATGCAGGAAGACGCGGTGCAGCCCAAGATCTCCTCTCGAAATGCCCAGAATCCATCCGGAACCACGCCGATGTTCTGA ATCTTTTTACTCCAGTGAAACACGCCGGAGCCGCTGCTGATATCAGTGTGGCTGTGTAG
AA sequence Show only first row Show all	>Lus10032092 pacid=23161102 polypeptide=Lus10032092 locus=Lus10032092.g ID=Lus10032092.BGIv1.0 annot-version=v1.0 MRNSWRSLLLRTNTRSSLNVSSISPHLHRQVNSSCSPHLSSLRTIPSYLRPLSGLPSSVNSRNVRHFSSDPLVEPSSKDSDPELLAVSNVFTNFSDVGDI NREMETSGVVISHDLVLKVLKSLQSNPDAAQRFFGWVLDKDGQKLSSKSYNWMLGILGTNGCTVEFWDLVETMTKKGYGMSKVTHDRAKEKFLKEGLKND LAKLNTVFASGSTDDSTEKLGVRIGRIVRNNVWSEDVEKEIKDLNVSFSAELVMTVVDSSAMDPMKALIFFRWVDESGLFNHGQRSYNAIARVLGREDCN DRFWKVTEEMKSKGYEMEVETFDKVLGRFINRKMNKESVDLYEFAMAGRNKPSSSRCVFILRKIVAAKQLDLDLFSRVLKIYTKYGDALTDSMLDTVLKT LTSVGRFEDCTKILKEMKEYGFTAGGNLQSKIAFRLGSSLNKKEASAFVDHMDLDKKAWISLIKGHCTSGDLEAASACFKQMAASKQGISGASYAFESLV KAYCYKNRAADVCKLLHECADKNGLKPLHTTYKLLISKLLARQDGFKDALSVVDRMRSDGFPPFVEPCIRYLSEQGTGDDGVEFLKSTTKKKFPATPLVL RVFEGYINAGRRGAAQDLLSKCPESIRNHADVLNLFTPVKHAGAAADISVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	0	1
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	1.4	0.9347
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	1.4	0.9384
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	3.2	0.9213
AT1G27090			glycine-rich protein (.1)		Lus10036699 [exp]	3.3	0.9105
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	3.5	0.9237
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10013991 [exp]	4.0	0.9141
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	4.6	0.8972
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	4.9	0.9219
AT2G44530			Phosphoribosyltransferase fami...		Lus10027908 [exp]	5.8	0.8900
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	6.5	0.9206

Compare expression of checked genes

Lus10032092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.