Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27460 282 / 6e-93 AtSGF29a SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) AT5G40550 272 / 6e-89 AtSGF29b SaGa associated Factor 29 b, SGF29 tudor-like domain (.1.2) AT5G19830 236 / 1e-75 Peptidyl-tRNA hydrolase family protein (.1) AT5G38290 173 / 8e-51 Peptidyl-tRNA hydrolase family protein (.1.2) AT5G16140 169 / 1e-49 Peptidyl-tRNA hydrolase family protein (.1.2) AT1G18440 166 / 8e-48 Peptidyl-tRNA hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014593 [exp] 373 / 6e-128 AT3G27460 384 / 2e-135 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) Lus10014589 [exp] 341 / 2e-116 AT5G19830 316 / 2e-110 Peptidyl-tRNA hydrolase family protein (.1) Lus10031901 [exp] 165 / 4e-48 AT5G16140 333 / 1e-116 Peptidyl-tRNA hydrolase family protein (.1.2) Lus10042977 [exp] 159 / 7e-46 AT1G18440 345 / 6e-121 Peptidyl-tRNA hydrolase family protein (.1) Lus10031327 [exp] 147 / 3e-42 AT5G38290 240 / 2e-81 Peptidyl-tRNA hydrolase family protein (.1.2) Lus10032480 [exp] 148 / 3e-41 AT1G18440 332 / 5e-115 Peptidyl-tRNA hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342700 [exp] 284 / 1e-93 AT3G27460 374 / 9e-132 SaGa associated Factor 29 a, SGF29 tudor-like domain (.1.2) Potri.001G005000 [exp] 281 / 4e-93 AT5G19830 327 / 4e-115 Peptidyl-tRNA hydrolase family protein (.1) Potri.004G098100 [exp] 183 / 6e-55 AT5G38290 348 / 3e-122 Peptidyl-tRNA hydrolase family protein (.1.2) Potri.012G061100 [exp] 168 / 1e-48 AT1G18440 343 / 2e-119 Peptidyl-tRNA hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01195 [flax] [poplar] Pept_tRNA_hydro Peptidyl-tRNA hydrolase CL0049 [flax] [poplar] Tudor PF07039 [flax] [poplar] DUF1325 SGF29 tudor-like domain
Representative CDS sequence Show only first row Show all	>Lus10032093 pacid=23161170 polypeptide=Lus10032093 locus=Lus10032093.g ID=Lus10032093.BGIv1.0 annot-version=v1.0 ATGTCATCTCCGGACATCTCCGGAATATTAGACAATTCAAGGGAGCTCGATCGGCTAAGGAAGGAACAAGAGGAAGTCCTCTTGGAGATCAACAAGATGC ATAAAAAGCTTCAAGCAACTCCGGAGGTGGTTGAAAAGCCTGGCGATAACTCGTTGCCAAAGCTGAAACTGTTATATATTGCGGCCAGGGATTTGTCGGA AAGTGAAATAAAAAACTTTCTTTTTTCTGGAGGTCTTATCTATGGTGATGTTTCTGGTTTTGCTTGTAATGAACTCGTCTTGTACTTATTAGATGTTAAA TTTACTGCAGAAGGTAATGAACAGAAAAGGAAAAGAATGAAAGCCGATTCAGATATCCCTAGGCTTTCGCCTTCTATGAAAAATCAACTTGATGCTTGTG CCAGCTTGATAGGTGAACAGGTTGCGGCCAGGGTTACAGGTGATGATGCTGAAAAGGATGAATGGTTCGTTGTAAAGGTCATGCATTTCGATAGAGACAA AAGAGAGAAGTACAGGCTACCGATGTCGTGTATTATTCCTTTCCCGAAGCGAAACGATCCAGCTAGTGCACCGGATTTCCCTCCAGGAAGGCATGTTTTG GCTGTTTATCCAGGAACAACAGCACTCTATAAGGCAACTGTTGCCAATCCCCTCAGAAAGGTCGACTCTTTGAAACAAAACTACAGATCTCAACTCTTAG AAGTTACAAGTCGCTTTTTTTTCCGAAAAGGTTACAAGTCACTTATATGTTGCTATCTTTTGCATGATTGGGTTTTCCCTAACCAAAATGCTATTTTCAT CGGTACAGCGAAAATCAGACGAGTGGGGTTTGAGATGATTGATGCATTTGCTGAATCAGAAGGAATTCCTATGGATAAAGTGCAATGTAAAGCTATGTAT GGAGAAGCTTTTATTGGAGTAGCACCCGTCCTTCTTGCGAAGCCTCAAACTTATATGAATTTGAGTGGTGAATCGGTCGGACCTCTTGCAGCTTATTACA AACTACCTCTTAACCGAGTCTTAGTGTTTCATGATGACATGGACTTGCCTTGTGGAGTGCTCCGACTTCAACCAAAGGGAGGTCATGGAAGCCACAACGG GTATGGGCATAGTAGTTATGGTCAACATTTGAAGAATGTGATCTATCATTTTCGAGACAACAGAGAATTTGCTCGACTCAGGATAGGGATTGGGAGACCT CCTGGTCAAATGGACCCAAAGGCTTTCTTGTTGCAGAGGTTCAATGCCACAGCTCAACAGCGAATTGATGCGGCTTTGCCGGAAGGAGTTGCTGCATTGA AGTCAATTCTATCAAAAGGGTTGACAGAGACAGGGAGATGGTTCAACCAACAACAAAAGTACAAGCACATAAGATTGCAAACTCTCCCAACATGA
AA sequence Show only first row Show all	>Lus10032093 pacid=23161170 polypeptide=Lus10032093 locus=Lus10032093.g ID=Lus10032093.BGIv1.0 annot-version=v1.0 MSSPDISGILDNSRELDRLRKEQEEVLLEINKMHKKLQATPEVVEKPGDNSLPKLKLLYIAARDLSESEIKNFLFSGGLIYGDVSGFACNELVLYLLDVK FTAEGNEQKRKRMKADSDIPRLSPSMKNQLDACASLIGEQVAARVTGDDAEKDEWFVVKVMHFDRDKREKYRLPMSCIIPFPKRNDPASAPDFPPGRHVL AVYPGTTALYKATVANPLRKVDSLKQNYRSQLLEVTSRFFFRKGYKSLICCYLLHDWVFPNQNAIFIGTAKIRRVGFEMIDAFAESEGIPMDKVQCKAMY GEAFIGVAPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVFHDDMDLPCGVLRLQPKGGHGSHNGYGHSSYGQHLKNVIYHFRDNREFARLRIGIGRP PGQMDPKAFLLQRFNATAQQRIDAALPEGVAALKSILSKGLTETGRWFNQQQKYKHIRLQTLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10032093 [exp]	0	1
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10006026 [exp]	8.0	0.6562
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	31.7	0.6455
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10043086 [exp]	50.8	0.6214
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	51.9	0.6169
AT5G10190			Major facilitator superfamily ...		Lus10027265 [exp]	81.5	0.6169
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10041311 [exp]	94.4	0.5802
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	108.3	0.6082
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10007300 [exp]	127.2	0.5971
AT3G18150			RNI-like superfamily protein (...		Lus10029586 [exp]	131.1	0.5905
AT5G28910			unknown protein		Lus10008196 [exp]	169.2	0.5804

Compare expression of checked genes

Lus10032093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.