Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14450 573 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G26430 369 / 3e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 333 / 1e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 333 / 1e-112 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT1G54790 289 / 6e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT4G01130 276 / 4e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G56670 270 / 1e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 269 / 3e-87 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 249 / 1e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 238 / 3e-75 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014592 [exp] 731 / 0 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008784 [exp] 382 / 2e-131 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10006224 [exp] 341 / 1e-110 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003021 [exp] 293 / 2e-96 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029980 [exp] 290 / 3e-95 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10036873 [exp] 284 / 4e-94 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10012644 [exp] 281 / 1e-91 AT4G01130 494 / 1e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029639 [exp] 280 / 1e-91 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029638 [exp] 279 / 7e-91 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342600 [exp] 617 / 0 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 369 / 2e-126 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G047900 [exp] 367 / 3e-125 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 350 / 1e-118 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 348 / 7e-118 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 337 / 9e-114 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 327 / 1e-109 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G094100 [exp] 295 / 4e-97 AT4G01130 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 293 / 1e-96 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 289 / 4e-95 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10032094 pacid=23161163 polypeptide=Lus10032094 locus=Lus10032094.g ID=Lus10032094.BGIv1.0 annot-version=v1.0 ATGGCTTCAGGTCCTTGTAGGTTTCCTTGTGGGGTTTTGGTCTCTGGGCTCCTCCTGGTTTTCTCGGTTTTGAGCTCTGGAAATGTTGCTGCTGCTGCTT TGTTGCCTTGTGAATTCCCAGCCATCTACAACTTTGGAGACTCGAATTCAGACACTGGAGGAATATCAGCTGCGTTTGTCCCAATCTCAGCTCCTTACGG CCAACATTTCTTCCGCAAGCCTGCTGGTCGAGACGCCGATGGCCGCCTCACTGTTGATTTCATTGCTGAGAGGCTAAAGCTGCCGTATTTGAGTGCATAC TTGAACTCAATCGGGAGTAAGTACAGGCATGGAGCGAATTTCGCAACTGGAGGGTCGACAATCAGGAGGCAGAATGAGACCATTTTCCAGTATGGGATTA GCCCGTTTGCTCTTGATATGCAGATTGTTCAGTTTGGTCAATTCAAAGCAAGAACCGCTGAACTCTACAACCAGGTGAAGGGCACTCCAGAGGCGGAGAA GCTTCCAAGGCCTGAGGAATTCTCAAAGGCTCTCTACACTTTCGACATCGGCCAGAATGATCTGTCTGTTGGTTTCAGGAAGAGTGCTGACCAGCTCAAA GCAGAATTGCCTGACATTGTTGAACAGCTAGCTTCTGCAGTCAAACACTTGTATGAACAAGGAGGAAGGTCATTCTGGATCCACAACACGGGTCCATTCG GTTGCCTGCCAGTCAACTTATTCTACGTTTCGAATCCAGCACCTCCGGGTTATCTCGACGAGCTCGGATGTGTCAAGGCTCAGAATGAAATGTCAGTTTT ATTCAACAAGCAGCTCAAGGACAGAGTGACAAACCTCAGAAATGAGCTAAAGGAAGCTGCAATTGTCTATGTTGATGTTCATGCTGCTAAATTTGAACTC ATTGCCAATGCCAAGAAGTTAGGTTTCGCTGATCCGCTGAAGGTGTGCTGCGGGTTCCACGAGAAGTACGATCACGTTTGGTGTGGAAACAAAGGGAAAG TGAATAATGGAAGTGAAGTATATGGAGCTTCCTGTAAAGACCCTTCTGTGTATGCTAGCTGGGATGGCGTCCATTACACTGAGGCTGCAAACAAATGGGT GGCTGATCATACACATAACGGCTCCTTGACCGATCCACCGACTCCGATTACTCGAGCATGCCATAGGTTGTGA
AA sequence Show only first row Show all	>Lus10032094 pacid=23161163 polypeptide=Lus10032094 locus=Lus10032094.g ID=Lus10032094.BGIv1.0 annot-version=v1.0 MASGPCRFPCGVLVSGLLLVFSVLSSGNVAAAALLPCEFPAIYNFGDSNSDTGGISAAFVPISAPYGQHFFRKPAGRDADGRLTVDFIAERLKLPYLSAY LNSIGSKYRHGANFATGGSTIRRQNETIFQYGISPFALDMQIVQFGQFKARTAELYNQVKGTPEAEKLPRPEEFSKALYTFDIGQNDLSVGFRKSADQLK AELPDIVEQLASAVKHLYEQGGRSFWIHNTGPFGCLPVNLFYVSNPAPPGYLDELGCVKAQNEMSVLFNKQLKDRVTNLRNELKEAAIVYVDVHAAKFEL IANAKKLGFADPLKVCCGFHEKYDHVWCGNKGKVNNGSEVYGASCKDPSVYASWDGVHYTEAANKWVADHTHNGSLTDPPTPITRACHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10032094 [exp]	0	1
AT4G34760			SAUR-like auxin-responsive pro...		Lus10007553 [exp]	1.7	0.9067
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	5.0	0.8563
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	8.7	0.8654
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	9.8	0.8589
AT5G13100			unknown protein		Lus10015761 [exp]	12.4	0.8205
AT2G21200			SAUR-like auxin-responsive pro...		Lus10008992 [exp]	15.9	0.8355
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	16.4	0.8431
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	16.5	0.8523
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	16.8	0.8550
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	21.0	0.8617

Compare expression of checked genes

Lus10032094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.