Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17611 327 / 2e-111 ATRBL14 RHOMBOID-like protein 14 (.1.2.3) AT3G58460 81 / 8e-17 ATRBL15 RHOMBOID-like protein 15 (.1.2) AT3G59520 50 / 8e-07 ATRBL13 RHOMBOID-like protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014591 [exp] 479 / 2e-161 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10017221 [exp] 81 / 1e-16 AT1G03475 557 / 0.0 LESION INITIATION 2, Coproporphyrinogen III oxidase (.1) Lus10021092 [exp] 76 / 5e-15 AT3G58460 535 / 0.0 RHOMBOID-like protein 15 (.1.2) Lus10008156 [exp] 58 / 2e-09 AT3G59520 447 / 8e-161 RHOMBOID-like protein 13 (.1) Lus10005310 [exp] 46 / 1e-05 AT3G59520 326 / 3e-114 RHOMBOID-like protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G004600 [exp] 366 / 5e-127 AT3G17611 352 / 4e-121 RHOMBOID-like protein 14 (.1.2.3) Potri.006G197900 [exp] 79 / 3e-16 AT3G58460 561 / 0.0 RHOMBOID-like protein 15 (.1.2) Potri.007G130300 [exp] 52 / 1e-07 AT3G59520 441 / 1e-158 RHOMBOID-like protein 13 (.1) Potri.017G027800 [exp] 52 / 2e-07 AT3G59520 434 / 1e-155 RHOMBOID-like protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10032095 pacid=23161206 polypeptide=Lus10032095 locus=Lus10032095.g ID=Lus10032095.BGIv1.0 annot-version=v1.0 ATGGAAAGCAGAGGAAAGAGGTTTTTGCCGCTACTCGCCGTTTACTTCGCCTCCGAGTACTACAGGCTACCATGGAAACCTCCGGTGACGGCGGCCTTAA TCGCCGCCAATACCTTAATCTACCTCGACCCGGCTTTCCTCCATCATATCCTCCCTTCCATCTATCAGGTCGCCTTCAACCCATATCTCATCCTCAAGAA CATGGATCTGAGGCGCTTCTTCTTGTCACCGTTCTACCATCTCGGAGAATCCCACTTGTTCTTCAACATGATGTCTCTACTGTGGAAGGGCATCCAGCTG GAGGCATCAATGGGGAGCATCGAGTTCGGCTCTATGGTCGCTACACTCCTCACCATGTCCCAAGGGATTACTCTGCTGCTAGCCAAGACCCTGGTTTTCT TCGACTACCCAAAGCCATTCTACACTCAATATAGTGTCGGCTTCTCCGGAGTCTTGTTCGCAATGAAGCTCATCCTCAACTCCGATTCTCCAGACTACAC TCATGTCCATGGACTGACGGTCCCCACACGCTACGCTGCTTGGGCCGAACTTTTACTCATCCAGCTCGTCGCACCTGATTCCTCATTCCTTGGCCACCTC AGTGGGATACTCCCTGGGATTCTGTACCTTAAGCTTCAAGTACGAAACACCGGGTTGGACCCTTTTGCTAGAATGGTCAGAGGGTTCATCCATATTGTGA AGTGGCCGTTGAGATTAGCGAGGGGGTTGTTTCATCGCAGTAATAGTCGGGGTCGTATCACTGGTCGGGGATCCACTGTTGGTGGTGGTGATCGATCGAG GGATGGTTTGAGAGGTGTTTGGAGATGTGTAGCGTGTACTTATGATAATTCCGGTTGGTTGAGCGAGTGTGAGATGTGTGGAACGAGGCGGGGAGGGGTA TCGGGTTCGGGGGATGGTGGTGAGGTTGGGGCTGAAGAGATTTGGAGGCGTAGGATTGAGAGGTTTGGGTATTGA
AA sequence Show only first row Show all	>Lus10032095 pacid=23161206 polypeptide=Lus10032095 locus=Lus10032095.g ID=Lus10032095.BGIv1.0 annot-version=v1.0 MESRGKRFLPLLAVYFASEYYRLPWKPPVTAALIAANTLIYLDPAFLHHILPSIYQVAFNPYLILKNMDLRRFFLSPFYHLGESHLFFNMMSLLWKGIQL EASMGSIEFGSMVATLLTMSQGITLLLAKTLVFFDYPKPFYTQYSVGFSGVLFAMKLILNSDSPDYTHVHGLTVPTRYAAWAELLLIQLVAPDSSFLGHL SGILPGILYLKLQVRNTGLDPFARMVRGFIHIVKWPLRLARGLFHRSNSRGRITGRGSTVGGGDRSRDGLRGVWRCVACTYDNSGWLSECEMCGTRRGGV SGSGDGGEVGAEEIWRRRIERFGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17611		ATRBL14	RHOMBOID-like protein 14 (.1.2...		Lus10032095 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10024680 [exp]	4.2	0.8187
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	5.3	0.8218
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	11.1	0.8049
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10032164 [exp]	16.0	0.7633
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10033545 [exp]	16.2	0.7782
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	18.0	0.7780
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	25.3	0.8106
AT1G03070			Bax inhibitor-1 family protein...		Lus10042631 [exp]	29.5	0.7698
AT2G23090			Uncharacterised protein family...		Lus10014734 [exp]	36.7	0.7261
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10026834 [exp]	37.3	0.7884

Compare expression of checked genes

Lus10032095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.