Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 612 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 594 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 454 / 1e-149 ARA12 Subtilase family protein (.1) AT4G34980 446 / 1e-146 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 445 / 7e-146 Subtilase family protein (.1) AT1G20160 428 / 5e-140 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G45650 426 / 3e-138 subtilase family protein (.1) AT1G04110 418 / 2e-135 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT4G10530 416 / 7e-135 Subtilase family protein (.1) AT1G20150 414 / 5e-134 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014591 [exp] 1310 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10023048 [exp] 742 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 736 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 612 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10032425 [exp] 570 / 0 AT5G59810 607 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 540 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 535 / 1e-180 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 533 / 4e-180 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10039085 [exp] 532 / 1e-179 AT5G59810 827 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G050000 [exp] 715 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 711 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 709 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.005G067200 [exp] 669 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102100 [exp] 653 / 0 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 645 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 644 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 643 / 0 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 621 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.001G469000 [exp] 608 / 0 AT5G59810 754 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10032096 pacid=23161286 polypeptide=Lus10032096 locus=Lus10032096.g ID=Lus10032096.BGIv1.0 annot-version=v1.0 ATGAGGAGCACTTTCAGTGTTTGTTGTTTTGCTGCGTTGCTTTCCTTGTGCATCCTCAACTCAGCGTATGCTGCGGAAAAGTCGTCGTATATTGTGTTCC TGCGGAGGAATTCGAATGGGCCGTTAATCGACCAGGACTTGGATGGCGATGCCATGAGCGAGACGTACCATGGCGTTCTCGCTTCTTGCATGGAAAGTAA CGAGGAGAAGGCCAGAGAAGCCATATTCTATTCATACTCCAGCAGGTTCAATGGATTTGCAGCAACTTTGGACGATGTTGAAGCTGAGCAACTTGAGAGC CATCCTGAAGTAATAGCAGTGCTGCCAAATGAAGTTTACCAAATACAAACAACTAGCTCCTGGCGATTTCTGGGGCTAGAGAACAGTGCCGGAACAGTCC CACCTGAGTCCCTCTGGATAAAGGCCAAATTCGGTCGCGATGTCATTATTGGAAACCTTGACACTGGCGTTTGGCCTGAATCCCCATTCTTCAAGGACAC AGGACTGGGACCAATTCCACCCAGATGGAAAGGCAAATGCGCCGTCGCCAACGGCACTACACCGCCATTCAAATGCAACCGGAAGCTGATCGGAGCAAGA GCCTTCAACAGCGCGTCTCCACGAGACGTGAACGGCCACGGCACCCACACACTTTCCACAGCCGGCGGCTCGTTCGTCCCGGGAGCCAACTTCCTAGGAT CGGCTAAAGGAAGGGCGAAAGGCGGTTCACCGGGAGCCCGAGTCGCTGCGTACAAAGTCTGCAACGACAATGGCGGGTGCGGATCTGCAGACATACTTGC AGGATTCGACGCCGCGATTCAGGATAAAGTGGATGTGATTACTGTCTCTCTTGGTTCGTACGTGGCTAATGATTACGTCAGGGACACCATCGCGATTGGA TCGTTCCACGCCGTGAGGAGTGGGATTCCTGTAGTTTGTTCGGCTGGGAATTCTGGGTTTGATGGCTCGGTTAGCAATGTTGCTCCCTGGATTCTTACTG TTGCTGCTAGTACACTCGATCGGCGATTCGTCTCCGATGTGAAGCTGGGGAATGGGAAGGTGTACAAGGGGATAAGCTTCTCGAGCAATACTACTCCGTC CAAGAAGTTTCATCCCTTGATCAATGCTGTTGCTGCCAAAGCACCTGGTGCCTCTGAATTTAACGCACGGTACTGCAATCCTGGAAGCTTGGATCCAAGC AAGGTGAAGGGCAAGATAGTGTTTTGTATTCGGAGCGGTGTAGATGTTCAGAAAAGCTACGTTGTGGCACAAGCTGGTGGAGTAGGAGTAGTCCTTGCTA ATCCATCCTCAGGTGCCATCGGTCCTCAACCTCATTTCATTCCCACTTCAGCCATCTCTAAGGTGGATGGTGATGCCGTTCTTAAATACATCTCCAACAC CTCGTCCCCAGTTGCTTACATTATTGCCGGAAACACAGAAGCCAAAGGTCAAACAGGGCAATCTTTCGACAACCGTCGTATTCCATACAACATCATATCC GGGACATCGATGTCTTGTCCCCATGTTGCCGGAATTGTTGGCCTCCTCAAGACCCTTCACCCTAAATGGAGCCCTGCCGCCATTAGATCTGCTATCATCA CTACTGCTAATACCACAAACAACAAGAGGCAGCCAATCCAAATGGAATCCGGAACCAAAGCCAACCAATTCAACTACGGAGCAGGACACGTCACGCCCAA CAAAGCAGCATCTCCAGGACTAGTTTACGAGCTAAACCTCACGGACTACTTGAACTTCCTCTGCTACATAGGCTACACTCCCCAGCAGAGAGCCGTTTTC CACGACAAGCCGTATACCTGCCCGCAGAAGACGGCAACAAGCCTGTCCAACCTCAACTACCCTTCCATTTCGGTCCCCAATTTGTCCGGGAAAATGACAG TAACACGAACCGCGAAGAACGTGGGGGGTGCTCCTGGTGTGTACAGGGTTAAAGTGGAAGCGCCTGCCGGAATCAAAGTCGATGTCAATCCTAAAGTGCT GAGCTTCAGTAAAGTGGGTGAAGTGAAGAAGTACAGTGTGAGTCTGGAGGCGATGAGTACTGCTGGGAGTGGATACTTGTTTGGAGGAATCACTTGGTGG GATGGGAAGAATCATCGGGTTAGGAGTCCGCTTGTTGTGCGGAAAGCAGCAAATGGAGTTGCTGAATCCATGTGA
AA sequence Show only first row Show all	>Lus10032096 pacid=23161286 polypeptide=Lus10032096 locus=Lus10032096.g ID=Lus10032096.BGIv1.0 annot-version=v1.0 MRSTFSVCCFAALLSLCILNSAYAAEKSSYIVFLRRNSNGPLIDQDLDGDAMSETYHGVLASCMESNEEKAREAIFYSYSSRFNGFAATLDDVEAEQLES HPEVIAVLPNEVYQIQTTSSWRFLGLENSAGTVPPESLWIKAKFGRDVIIGNLDTGVWPESPFFKDTGLGPIPPRWKGKCAVANGTTPPFKCNRKLIGAR AFNSASPRDVNGHGTHTLSTAGGSFVPGANFLGSAKGRAKGGSPGARVAAYKVCNDNGGCGSADILAGFDAAIQDKVDVITVSLGSYVANDYVRDTIAIG SFHAVRSGIPVVCSAGNSGFDGSVSNVAPWILTVAASTLDRRFVSDVKLGNGKVYKGISFSSNTTPSKKFHPLINAVAAKAPGASEFNARYCNPGSLDPS KVKGKIVFCIRSGVDVQKSYVVAQAGGVGVVLANPSSGAIGPQPHFIPTSAISKVDGDAVLKYISNTSSPVAYIIAGNTEAKGQTGQSFDNRRIPYNIIS GTSMSCPHVAGIVGLLKTLHPKWSPAAIRSAIITTANTTNNKRQPIQMESGTKANQFNYGAGHVTPNKAASPGLVYELNLTDYLNFLCYIGYTPQQRAVF HDKPYTCPQKTATSLSNLNYPSISVPNLSGKMTVTRTAKNVGGAPGVYRVKVEAPAGIKVDVNPKVLSFSKVGEVKKYSVSLEAMSTAGSGYLFGGITWW DGKNHRVRSPLVVRKAANGVAESM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10032096 [exp]	0	1
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	1.7	0.9672
AT1G68850			Peroxidase superfamily protein...		Lus10029094 [exp]	3.2	0.9589
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	4.9	0.9554
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	5.7	0.9545
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	7.1	0.9515
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	7.3	0.9506
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10038937 [exp]	7.9	0.9397
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	8.5	0.9417
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Lus10039436 [exp]	8.6	0.8985
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	8.8	0.9423

Compare expression of checked genes

Lus10032096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.