Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14420 493 / 1e-172 RGLG2 RING domain ligase2 (.1.2.3.4) AT3G01650 491 / 2e-171 RGLG1 RING domain ligase1 (.1) AT1G67800 457 / 3e-159 Copine (Calcium-dependent phospholipid-binding protein) family AT1G79380 387 / 7e-132 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) AT5G63970 381 / 4e-130 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) AT5G07300 103 / 1e-23 BON2 BONZAI 2, Calcium-dependent phospholipid-binding Copine family protein (.1) AT5G61900 99 / 5e-22 CPN1, BON1 COPINE 1, BONZAI 1, Calcium-dependent phospholipid-binding Copine family protein (.1.3) AT5G61910 99 / 9e-22 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G08860 97 / 3e-21 BON3 BONZAI 3, Calcium-dependent phospholipid-binding Copine family protein (.1) AT1G70680 44 / 0.0001 Caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014587 [exp] 726 / 0 AT3G01650 517 / 0.0 RING domain ligase1 (.1) Lus10022294 [exp] 568 / 0 AT3G01650 608 / 0.0 RING domain ligase1 (.1) Lus10006231 [exp] 488 / 7e-172 AT3G01650 514 / 0.0 RING domain ligase1 (.1) Lus10036879 [exp] 488 / 2e-170 AT3G01650 555 / 0.0 RING domain ligase1 (.1) Lus10011405 [exp] 470 / 4e-164 AT5G14420 566 / 0.0 RING domain ligase2 (.1.2.3.4) Lus10006463 [exp] 449 / 7e-156 AT3G01650 547 / 0.0 RING domain ligase1 (.1) Lus10033043 [exp] 436 / 2e-150 AT3G01650 492 / 4e-172 RING domain ligase1 (.1) Lus10003654 [exp] 407 / 1e-139 AT3G01650 376 / 2e-127 RING domain ligase1 (.1) Lus10020885 [exp] 381 / 2e-129 AT5G63970 503 / 6e-179 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342200 [exp] 563 / 0 AT5G14420 572 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.012G090100 [exp] 484 / 6e-170 AT5G14420 575 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.010G049600 [exp] 475 / 9e-166 AT5G14420 580 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.008G183600 [exp] 471 / 8e-164 AT5G14420 571 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.006G002600 [exp] 443 / 4e-154 AT5G14420 521 / 0.0 RING domain ligase2 (.1.2.3.4) Potri.016G003000 [exp] 425 / 4e-147 AT5G14420 500 / 2e-176 RING domain ligase2 (.1.2.3.4) Potri.010G174800 [exp] 421 / 7e-145 AT1G79380 535 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.005G065700 [exp] 396 / 2e-135 AT5G63970 551 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2) Potri.008G081300 [exp] 394 / 5e-135 AT1G79380 518 / 0.0 Ca(2)-dependent phospholipid-binding protein (Copine) family (.1) Potri.007G103700 [exp] 374 / 1e-127 AT5G63970 524 / 0.0 Copine (Calcium-dependent phospholipid-binding protein) family (.1), Copine (Calcium-dependent phospholipid-binding protein) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [flax] [poplar] vWA-like PF07002 [flax] [poplar] Copine Copine CL0220 [flax] [poplar] EF_hand PF05042 [flax] [poplar] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Lus10032097 pacid=23161068 polypeptide=Lus10032097 locus=Lus10032097.g ID=Lus10032097.BGIv1.0 annot-version=v1.0 ATGCAAAGCAAATCTATGGTGCACATGGATTCCGCTGGTAGCAGAAACAGTAAGCAGCAGCAGCAACTAAGTAGTAGTAGCAGTGGTGAGCCAAGCGCGC TGCAAAAGCATGTGATGTTCTTTGACCGCGATCAAGATGGTGTCATATATCCTTCGGATACCTATCGAGACCAGTATTCTAAATTCATGGGAGGACAAAG CTCGAAGGACGAGAACTTGAGGCCTGATTCCTCTGCCAGACCCGCCACAACTTCGTGGGATTATAATGCTCAGCAGTCTTATGGTCAAGACAGCTATGGC TATAGCTATGCACCCCCTCAAGCTTCGACGCAGCAAAGCTATCCTTTGTTTCAGGACACGGGCGTTGATAGAAGGCGGCTTGATAGGAAGTATTCGATTA TTCCGGATGACTTTAGATCCTTGGACCAGGTGACTGAAGCTCTTGGACGTGCTGGCCTTGAATCTTCAAATCTCATTGTTGGAATTGACTTTACAAAAAG CAACGAGTGGACAGGTGCAAAGTCATACAACAAGAAAAGTTTGCATCATATTGGAGATGGCTTTAATCCCTACGAGCAAGCAATTTCCATTGTGGGGAAA ACTTTAGCTGCCTTTGATGAGGATAACTTGATTCCCTGTTTTGGATTTGGAGATGCAACGACCCATGATCAGGATGTCTTCAGTTTCTATCCAGATGAGA GGTGCTGTAATGGATTTGAGGAAGTTCTGAGTCGGTATCGAGAAATCGTTCCGAACTTGAGACTTGCAGGACCAACATCTTTTGGACCCATCATTGAGAA GGCAATGACAATTGTTGAGGAGAGTGGTGGTCAGTACCATGTATTATTGATAATAGCCGATGGCCAGGTTACTAGAAGTGTTGATACTGAACATGAGCGC TTAAGTCCACAGGAGCAGAAGACAGTTGATGCCATTGTAGAAGCCAGCAAGCTTCCCTTGTCTATTATTTTGGTTGGTGTTGGAGATGGCCCATGGGACA CGATGAAGGAGTTTGACGATAACATTCCTGCTAGAGAATTTGATAATTTCCAGTTTGTAAATTTCACGGAAATTATGTCAAAGAATATGGACCAGTCCCG GAAGGAGACACAGTTTGCACTTTCTGCTCTCATGGAGGTTCCTACTCAATACAAGGCCACTTTAGAGCTGAATCTTTTGGGTCGTCGAAAGGGAAATGTT CCTCGGAGAGTGGCACTCCCGCCTCCCGTCCCCGTATATGGGTCAACATCTTTCAGCAGCCCCAAACCTTTCCAGTCCACTAGCTTCAAGCCTAGTGTTC CAGCTTACGAACCGGTCAGTCATCCCATCAGCTCAGCTCCGCCCATCGAGATGTCAATTAATGAGAATCAGGTCGGTTGCCTGTAA
AA sequence Show only first row Show all	>Lus10032097 pacid=23161068 polypeptide=Lus10032097 locus=Lus10032097.g ID=Lus10032097.BGIv1.0 annot-version=v1.0 MQSKSMVHMDSAGSRNSKQQQQLSSSSSGEPSALQKHVMFFDRDQDGVIYPSDTYRDQYSKFMGGQSSKDENLRPDSSARPATTSWDYNAQQSYGQDSYG YSYAPPQASTQQSYPLFQDTGVDRRRLDRKYSIIPDDFRSLDQVTEALGRAGLESSNLIVGIDFTKSNEWTGAKSYNKKSLHHIGDGFNPYEQAISIVGK TLAAFDEDNLIPCFGFGDATTHDQDVFSFYPDERCCNGFEEVLSRYREIVPNLRLAGPTSFGPIIEKAMTIVEESGGQYHVLLIIADGQVTRSVDTEHER LSPQEQKTVDAIVEASKLPLSIILVGVGDGPWDTMKEFDDNIPAREFDNFQFVNFTEIMSKNMDQSRKETQFALSALMEVPTQYKATLELNLLGRRKGNV PRRVALPPPVPVYGSTSFSSPKPFQSTSFKPSVPAYEPVSHPISSAPPIEMSINENQVGCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	0	1
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	1.4	0.8918
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	6.0	0.8702
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	6.3	0.8828
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	7.5	0.8664
AT1G52320			unknown protein		Lus10035887 [exp]	8.1	0.8676
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	10.4	0.8979
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	12.3	0.8733
AT3G26020			Protein phosphatase 2A regulat...		Lus10036926 [exp]	14.8	0.8697
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	15.8	0.8578
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	16.9	0.8686

Compare expression of checked genes

Lus10032097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.