Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 130 / 4e-34 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 125 / 1e-32 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 91 / 6e-20 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G18000 48 / 1e-05 B3 VDD VERDANDI (.1) AT5G18090 47 / 2e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G25560 45 / 0.0001 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT4G33280 42 / 0.0007 B3 REM16 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024689 [exp] 505 / 3e-175 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10032315 [exp] 432 / 3e-142 AT3G19184 79 / 8e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10021906 [exp] 323 / 2e-107 ND / Lus10014586 [exp] 310 / 1e-101 AT3G19184 77 / 2e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 281 / 2e-88 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 253 / 2e-77 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 239 / 2e-72 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 213 / 3e-62 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10014043 [exp] 188 / 1e-53 AT3G19184 74 / 2e-14 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140700 [exp] 340 / 2e-111 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 310 / 3e-99 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 244 / 4e-74 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 226 / 5e-67 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 213 / 2e-62 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 210 / 3e-61 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 159 / 1e-44 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 154 / 1e-42 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 131 / 5e-35 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031700 [exp] 130 / 3e-34 AT5G42700 180 / 4e-57 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032098 pacid=23161177 polypeptide=Lus10032098 locus=Lus10032098.g ID=Lus10032098.BGIv1.0 annot-version=v1.0 ATGACAGTTCTTCAAGTGAAGAAAGAGCAGGATGCTAAGGGGAAGACACCGATGATGAAGATGAACGATATTCTATCCTTCACAAAGCAGGAGGGAAGCA TTATTCAAATCAAGTCTACTCTCAGCCAAACGGGAAAGAAGGCCACGAAAGAGAGCATTTACGTTAATAGCGAGGTTGAGAAGGCTGTAATGATGAAAGC AAAACGAATCGAATCTAGTTTACCAAGAAACTATCCTACCATGATCAAAGTCATGCTACCTTCACATGTTACTGGTGGATTTTGGCTGGGTCTTATGAAA GGGTTCTGTGACAAGCATTTGCCAGACGATGACACAATGATGGACCTGGAAGACGAGAATGGCGAAGTTCGACAAGCTAAGTTTCTAGCAAATAAGCCAG GGCTTAGCGGCGGGTGGAAAGGGTTCTCCATTAGTCACCAGTTGGTAATAGGAGATGTCATTGTTTTTCAGTTAGTTAAGCCAACCAGGTTCAAGGTCCA CATTGCGAGGGCAAGTGGCTTGGAGGAAAATGCTGTTGTTGGCCTTCTGCAAACGGACAACATTAAGGAACAAGTGGATTCTGGAGATGCAAATTCCAAT AGCATTGGCGCATCGGATTCCTCTGATACTGATTCGCTGGTTGTTCCGAGCAAGTCTACTATAAGCAAGACGCGAGAGAGGGTGGCTGTAGATAGGCTAT ACAATGATGTCGAGGTTGAGAATCTTGTGCTGTTAAAAGCACAAGAGGTTAAAGCTAGTCTACCGAAAAACTTCCCTACGATGATAAAAGTTATGCTACC TTCACATGTTGCAGGTGGATTTAGCTTGAGTCTTACGAAAGGGTTTGGTGCCAAGCATTTGCCTCATGAGGACACAATGCTCGACTTGGAAGACGAGGAT GGCAAAATTCATACTGCAAAGTATCTAGTTCATAGGCAAGGACTTAGCGGTGGATGGAGAGCCTTCTCTATTGATCACAAGCTAGTACCAGGAGATGTTC TGGTGTTTCAGTTAGTTGAGCCGACCAAGTTCAAGGTCTACATTGCGAGGGCAAGTGGTTCAGATGAAGTGGATGTTGCTCTTGGCCTTCTGCAAATGGA CAGTGATGGTGAAAAAATGATTTCTGATAACCTTCCCAAAGGTTACAGAGAAAGCAACTCCGAAGGCCACCAGTCCGATGATGGTTTTGGATTTGACATT TCAGATGGCATAAGAATGTTCGAATCAACAGCCATCGATTTCGAGCAAGTGAAAAGCTTTGACGACTTTGACATCGTGGTGAACGGCTTAGTCATAAACT GCGAGCTCTCCAAGCACCTTCGGCTCAAGTACTACGAACTATGCAGCAGCCAGAAGCTGTTTCTCCACGCACACATTCTCAGCGGCCTTAACTGTAAGCT GATTGTCGGAGTCATAGCCGAGACCATAAACATTGCGGATGCAATCAGAGCTTCGAAATTCAGCGGAGGGGCTTTGCAACAGATGGAAGACTTTCTGACG TGGGAGAAAACTCTGATGGCTTTTGAGAAATTGGGAATGAATGTTGAGTTCATACTCACTAGGTTGAGGCAGCTCATGGGACTTTGTGGCAATGCAAGTA GGCACAAGAGGCTGAGAACTGAGAGGATTCAGATAGAAGAGGAGGTGGAGATTTTGAAGGCAAAACTCGAGGAATCCGTCGAGAGGATTAAAAGGATCGA TGGAGAAATGGAAGTGGATGAGGTGGATGTTGAGGTGAAATTCGGAGATTTGGCAGAAGCTCCATGGTCACTGTGA
AA sequence Show only first row Show all	>Lus10032098 pacid=23161177 polypeptide=Lus10032098 locus=Lus10032098.g ID=Lus10032098.BGIv1.0 annot-version=v1.0 MTVLQVKKEQDAKGKTPMMKMNDILSFTKQEGSIIQIKSTLSQTGKKATKESIYVNSEVEKAVMMKAKRIESSLPRNYPTMIKVMLPSHVTGGFWLGLMK GFCDKHLPDDDTMMDLEDENGEVRQAKFLANKPGLSGGWKGFSISHQLVIGDVIVFQLVKPTRFKVHIARASGLEENAVVGLLQTDNIKEQVDSGDANSN SIGASDSSDTDSLVVPSKSTISKTRERVAVDRLYNDVEVENLVLLKAQEVKASLPKNFPTMIKVMLPSHVAGGFSLSLTKGFGAKHLPHEDTMLDLEDED GKIHTAKYLVHRQGLSGGWRAFSIDHKLVPGDVLVFQLVEPTKFKVYIARASGSDEVDVALGLLQMDSDGEKMISDNLPKGYRESNSEGHQSDDGFGFDI SDGIRMFESTAIDFEQVKSFDDFDIVVNGLVINCELSKHLRLKYYELCSSQKLFLHAHILSGLNCKLIVGVIAETINIADAIRASKFSGGALQQMEDFLT WEKTLMAFEKLGMNVEFILTRLRQLMGLCGNASRHKRLRTERIQIEEEVEILKAKLEESVERIKRIDGEMEVDEVDVEVKFGDLAEAPWSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032098 [exp]	0	1
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	6.3	0.9627
AT4G04980			unknown protein		Lus10011209 [exp]	12.2	0.9114
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	13.7	0.9595
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	15.6	0.9606
AT3G13898			unknown protein		Lus10008387 [exp]	15.7	0.9332
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	16.3	0.9587
AT1G09200			Histone superfamily protein (....		Lus10005270 [exp]	17.7	0.9544
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10026589 [exp]	17.8	0.9603
					Lus10026293 [exp]	22.3	0.9549
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	26.9	0.8686

Compare expression of checked genes

Lus10032098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.