Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56510 256 / 6e-84 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014585 [exp] 524 / 0 AT3G56510 248 / 3e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341300 [exp] 256 / 9e-84 AT3G56510 275 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032099 pacid=23161152 polypeptide=Lus10032099 locus=Lus10032099.g ID=Lus10032099.BGIv1.0 annot-version=v1.0 ATGGATGCCGAAGAGCTCGAAGCTAATATAATGAATTCTAAAGCTGATGGAAGTTTGAATGCCTGCAAGAGTAATTCATCAAGCAGATTGAAAAGCAAAA GGAAGAAGCGGACACATGAGGTTGAAGTCATGGAAGTGGAGAAACATGTTAATGGTGGCAACATAGGAGATGGAGTTGATGTTGAAGAGAGCTGTACGAG GCTGAAATATGGGAATAAGAAGAAAAGGATGGAAAAAACTGAAGCTGATGAGAAAGCTGACGAGGTGAAGAAGGGGAGCAAGATAAAACAACGCAGAGTA TTGGAAGAAACCGAAGGGAATGAAAAAGAGGAGAATGTTGTTGATGATGGCTCACTGGAGGAAGAAGAACCTAGGACTGAGGAAAATAATCAGGAACTCA TTGGAGATGTTACTACTGATTCTATTAGCAATGAGCATCAATCATTAGTTAATGAGAAAAAGGGTAATGAAAAGAAGAAGGGGAAGAGGCGCTTCTCAGA GGAAGCAGCTAAGGCTGGCAGCAGACTCGGTATTTGCTATTTAAGCCGAATCCCTCCTAACATGGATCATGTGATTCTTCGTCATATTCTCTCACAGTAT GCTAAAATCCAGAGGATCTATCTTGTACCAGAAGACTCAACTCCTATGGCATCTCAGAGAAAAGCTGCTAAACACAAGAGACAATCCTTCTCCGAAGGGT GGGTTGAGTTCTCTGATAAAGGTGTGGCAAAAAGAGTTGCTAATATGTTAAATGGCGAACAGATGGGTGGGAAGAAAAGATCCCAATTCTACTACGACAC ATGGAACATCAAATACTTGAGTAAATTCAAGTGGGATGATCTGACAGAGGAAATCGCTATAAAGAGAGCCACCAGAGAACAGAAGCTGGCCTTGGAACTT TCTGCTGCGAGGAGGGAACGGGATTTCTACCTCTCGAAAGTCGAGAGATCAATTGCCTTAACTAATATAGAAGAACGGTTAAAGAAGAAGCAAAAGGTAC CAGACCCACCGAAGAACATCCGTCGATTCCAACAGAACAAGCCAGTCGCTGATAAAACAAAGGAGAATAAATCCAAAATCTCTAAAGATTTCCTCACTGA GTTAAGAGGTGGTTTGGGTGAGGCAGTGTTTTGA
AA sequence Show only first row Show all	>Lus10032099 pacid=23161152 polypeptide=Lus10032099 locus=Lus10032099.g ID=Lus10032099.BGIv1.0 annot-version=v1.0 MDAEELEANIMNSKADGSLNACKSNSSSRLKSKRKKRTHEVEVMEVEKHVNGGNIGDGVDVEESCTRLKYGNKKKRMEKTEADEKADEVKKGSKIKQRRV LEETEGNEKEENVVDDGSLEEEEPRTEENNQELIGDVTTDSISNEHQSLVNEKKGNEKKKGKRRFSEEAAKAGSRLGICYLSRIPPNMDHVILRHILSQY AKIQRIYLVPEDSTPMASQRKAAKHKRQSFSEGWVEFSDKGVAKRVANMLNGEQMGGKKRSQFYYDTWNIKYLSKFKWDDLTEEIAIKRATREQKLALEL SAARRERDFYLSKVERSIALTNIEERLKKKQKVPDPPKNIRRFQQNKPVADKTKENKSKISKDFLTELRGGLGEAVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10032099 [exp]	0	1
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	4.2	0.9312
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	11.7	0.9304
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	12.3	0.9157
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	13.3	0.9026
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10027922 [exp]	13.9	0.9100
AT4G15640			unknown protein		Lus10033970 [exp]	15.0	0.9089
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	15.7	0.9303
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	16.1	0.9230
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	16.2	0.9014
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10011685 [exp]	16.3	0.9225

Compare expression of checked genes

Lus10032099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.