Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62600 500 / 2e-179 ATERDJ3B DNAJ heat shock family protein (.1) AT3G08910 171 / 1e-50 DNAJ heat shock family protein (.1) AT5G01390 165 / 4e-48 DNAJ heat shock family protein (.1.2.3.4) AT3G44110 149 / 2e-41 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 149 / 3e-41 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT5G48030 122 / 3e-31 GFA2 gametophytic factor 2 (.1) AT4G39960 107 / 1e-25 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G10350 101 / 4e-24 DNAJ heat shock family protein (.1) AT2G20550 97 / 5e-23 HSP40/DnaJ peptide-binding protein (.1.2) AT2G20560 98 / 6e-23 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014584 [exp] 648 / 0 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 598 / 0 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 585 / 0 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10042891 [exp] 154 / 3e-43 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10028188 [exp] 149 / 5e-41 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10004109 [exp] 127 / 3e-33 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10011934 [exp] 122 / 3e-31 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 121 / 7e-31 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10027634 [exp] 121 / 1e-30 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198000 [exp] 543 / 0 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 543 / 0 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 174 / 7e-51 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 172 / 3e-50 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 171 / 2e-49 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 166 / 8e-48 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.008G194000 [exp] 150 / 1e-42 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 146 / 5e-41 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 119 / 6e-30 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 113 / 7e-28 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032100 pacid=23161290 polypeptide=Lus10032100 locus=Lus10032100.g ID=Lus10032100.BGIv1.0 annot-version=v1.0 ATGGCGCATCGAGGAGCGAATCTCTTGTTCTTACTATGCGCTCTATCGCACTACGCTCTCATCTCCATTGCCGGTAAGAGCTATTACGATGTATTGCAAG TGGCGAAAGGTGCGTCGGACGATCAGATCAAGCGAGCTTACAGGAAGCTGGCATTGAAGTATCATCCCGATAAGAACCAAGGGAATGAGGAAGCTAATAA GCGCTTCGCCGAGATCAGCAACGCGTATGAGGTTTTGTCCGATGGCGAGAAGAGGAAGATATACGATGCTTATGGAGAGGAAGGGCTTAGGCAACATTCG GCTGGTGGAGGTGGCGGTGGAGGAATGAACATTCAAAACATTTTTGAACAATTCTTTGGTGGAGGAGGCCATTCTGAAGAGGAGGAAGAGAGGATACCCA AAGGCGATGATGTTATTGTTGATTTGGATGCAACGCTGGAGGATTTATACATGGGTGGCTCAGTTAATGTATGGAGAGAAAAGAATGTTATAAAGCCAGC CCCAGGAAAAAGACGCTGTAACTGCAGAAATGAGATGTATCATAGGCAAATTGGTCCAGGGATGTTCCAGCAGATGACAGAGCAGGTCTGTGATAAATGC CAGAATGTCAAGTTTGAAAGGGAAGGTTATTCTCTCACAATTGATATCGAGAAAGGAATGGAAGATGGACAAGAGGTAGTTTTCTACGAAGATGGTGAGC CCAAGATTGATGGGGAACCGGGAGACTTGAAGTTCCGGATTCGCACATCACCTCATGACGTTTTCACAAGGAAAGGCAACGACTTGCATGCAACAGTCAC CATTACCTTGGTCCAAGCGCTCGTTGGTTTCGAGAAGAAAATTAAACACCTTGATGAGCATCTAGTTGACATTAGCACCCAGGTAATCACTAAGCCCAAA GAAGTGAGGATGTTCAACGGCGAAGGGATGCCATTGTACGCGAGCACGAAGAAAGGAGACCTTTACGTCACATTTGAGGTTCTCTTCCCAAACTCATTGA CAGAGGAACAGAAATCAAAGATTAAGCAAGTTCTTAGCTAG
AA sequence Show only first row Show all	>Lus10032100 pacid=23161290 polypeptide=Lus10032100 locus=Lus10032100.g ID=Lus10032100.BGIv1.0 annot-version=v1.0 MAHRGANLLFLLCALSHYALISIAGKSYYDVLQVAKGASDDQIKRAYRKLALKYHPDKNQGNEEANKRFAEISNAYEVLSDGEKRKIYDAYGEEGLRQHS AGGGGGGGMNIQNIFEQFFGGGGHSEEEEERIPKGDDVIVDLDATLEDLYMGGSVNVWREKNVIKPAPGKRRCNCRNEMYHRQIGPGMFQQMTEQVCDKC QNVKFEREGYSLTIDIEKGMEDGQEVVFYEDGEPKIDGEPGDLKFRIRTSPHDVFTRKGNDLHATVTITLVQALVGFEKKIKHLDEHLVDISTQVITKPK EVRMFNGEGMPLYASTKKGDLYVTFEVLFPNSLTEEQKSKIKQVLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10032100 [exp]	0	1
AT1G42480			unknown protein		Lus10030732 [exp]	3.7	0.7178
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	3.9	0.7208
AT5G58030			Transport protein particle (TR...		Lus10003634 [exp]	17.7	0.7151
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	20.3	0.6223
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	26.7	0.6172
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10022297 [exp]	29.7	0.5655
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10039691 [exp]	42.9	0.5700
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10034351 [exp]	45.8	0.5458
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	57.4	0.5266
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	64.8	0.5644

Compare expression of checked genes

Lus10032100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.