Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40630 127 / 2e-37 Ubiquitin-like superfamily protein (.1) AT5G14360 124 / 2e-36 Ubiquitin-like superfamily protein (.1) AT3G51780 78 / 2e-17 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G62100 76 / 3e-17 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G52060 71 / 1e-14 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 68 / 1e-13 ATBAG3 BCL-2-associated athanogene 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022315 [exp] 147 / 8e-45 AT5G14360 158 / 2e-49 Ubiquitin-like superfamily protein (.1) Lus10014884 [exp] 140 / 6e-42 AT5G14360 158 / 2e-49 Ubiquitin-like superfamily protein (.1) Lus10005051 [exp] 97 / 8e-24 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 93 / 9e-23 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10023279 [exp] 79 / 6e-18 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10027420 [exp] 79 / 2e-17 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10038882 [exp] 75 / 6e-16 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 74 / 1e-15 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10006328 [exp] 72 / 3e-15 AT5G52060 194 / 2e-60 BCL-2-associated athanogene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G339100 [exp] 144 / 7e-44 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1) Potri.009G074300 [exp] 103 / 4e-27 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.001G279500 [exp] 101 / 4e-26 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.015G135500 [exp] 82 / 1e-18 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.001G358200 [exp] 79 / 1e-17 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.001G110300 [exp] 77 / 1e-16 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.012G133400 [exp] 76 / 3e-16 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 74 / 9e-16 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.016G121200 [exp] 63 / 6e-12 AT3G51780 218 / 1e-70 BCL-2-associated athanogene 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10032107 pacid=23161134 polypeptide=Lus10032107 locus=Lus10032107.g ID=Lus10032107.BGIv1.0 annot-version=v1.0 ATGTTGAAGTTAAAGTCCAAGAAGTTTTGCAGAGGGATCAGCTTCAAGCTAATTGGTGGGAGCAAAGGGAATAGTTCTACTTCTAGCAGTAATCATAAGA AGGGATCATCTTCATCATCTTCATCTTCATCTTCTTCTTCTTCTTCTTCTCATAATATCAGTGAAATAAAATGGGAGGTTAGGCCTGGTGGGATGCTGGT TCAGAAAAGACAGAGTATTGATGATCATGATGATACCACCTTTAATGGTGATGAGTTGATCACACTCAAAGTTACAACTGTTTCGCAATCCCACCATCAT ATCTCCATTGAACCCACTTCCACCTTTGGGGAATTGAAGGTGGTGTTGGAGATGGTGACAAAGATGGAGGCAAGGGAGCAAAGGGTATTGTACAGAGGGA AAGAGAGGGGAGATGATGAGTATCTACATATGGTTGGGGTGAGAGACAAAGACAAACTTCTTCTTTTGGAATATCCAGCCATCAAAGAAGAGAAGATGCT GCTCAGAAGAAGAAGACTCCATGGCTTGTCCTCTCCTTCATCTGCCCCCAACTATCCACCTACCTTCCGTACCATTAGTGTATAG
AA sequence Show only first row Show all	>Lus10032107 pacid=23161134 polypeptide=Lus10032107 locus=Lus10032107.g ID=Lus10032107.BGIv1.0 annot-version=v1.0 MLKLKSKKFCRGISFKLIGGSKGNSSTSSSNHKKGSSSSSSSSSSSSSSSHNISEIKWEVRPGGMLVQKRQSIDDHDDTTFNGDELITLKVTTVSQSHHH ISIEPTSTFGELKVVLEMVTKMEAREQRVLYRGKERGDDEYLHMVGVRDKDKLLLLEYPAIKEEKMLLRRRRLHGLSSPSSAPNYPPTFRTISV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	0	1
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001707 [exp]	1.7	0.9660
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	4.5	0.9287
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	4.5	0.9101
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10001705 [exp]	4.7	0.9485
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	6.9	0.9082
AT1G72230			Cupredoxin superfamily protein...		Lus10008720 [exp]	7.1	0.8933
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	7.1	0.9425
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10032894 [exp]	8.1	0.9257
AT1G73140		TBL31	Plant protein of unknown funct...		Lus10042845 [exp]	9.8	0.9408
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	14.7	0.9172

Compare expression of checked genes

Lus10032107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.