Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 172 / 1e-51 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT3G05860 137 / 2e-39 MADS MADS-box transcription factor family protein (.1.2.3) AT1G65300 130 / 4e-36 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26630 128 / 5e-36 MADS MADS-box transcription factor family protein (.1) AT5G26650 128 / 2e-34 MADS AGL36 AGAMOUS-like 36 (.1) AT1G65330 125 / 6e-34 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT5G27960 124 / 4e-33 MADS AGL90 AGAMOUS-like 90 (.1) AT5G27810 117 / 9e-33 MADS MADS-box transcription factor family protein (.1) AT1G31640 120 / 6e-31 MADS AGL92 AGAMOUS-like 92 (.1) AT1G31630 117 / 1e-30 MADS AGL86 AGAMOUS-like 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014578 [exp] 392 / 1e-138 AT5G48670 182 / 5e-56 AGAMOUS-like 80 (.1) Lus10022316 [exp] 194 / 4e-61 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10014883 [exp] 187 / 5e-58 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022325 [exp] 176 / 1e-53 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10007711 [exp] 124 / 2e-35 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10007713 [exp] 110 / 4e-30 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10029367 [exp] 96 / 4e-23 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10016180 [exp] 94 / 2e-22 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10000974 [exp] 91 / 4e-22 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002400 [exp] 225 / 1e-72 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 197 / 2e-62 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 188 / 7e-59 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 123 / 9e-34 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 127 / 3e-33 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 110 / 1e-29 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.002G255700 [exp] 77 / 1e-15 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.012G109900 [exp] 76 / 2e-15 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 74 / 8e-15 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 73 / 2e-14 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10032108 pacid=23161259 polypeptide=Lus10032108 locus=Lus10032108.g ID=Lus10032108.BGIv1.0 annot-version=v1.0 ATGACTAGGAAGAAAGTGAAGTTGGCTTATATAGCAAACGACTCGGCGAGAAAAGCCACATACAAGAAGAGGAAGAAGGGCCTGATGAAGAAGGTGAGCG AGCTGAGCACCCTGTGCGACATCCAGGCGTGTGCTATTGTGTACGGTCCTTACGACACGCAGCCGGAGACGTGGCCATCGACGCCGGCTGGGGTGCACCA GGTGTTGTCGAGGTTCAGGAAGGTGCCCCAAATGGAGCAGTGCAAGAAGATGGTCAACCAAGAGAAGTTCCTCGGGGAGCGGATCAAGAAGGCCGCAGAG CAGCTCCGGAAGCAGAAGCGCGACAACGACGAGAAGATGGTGCAAAACGCCCTCTTCGAGTGCCTCACGGGCAGGATCTCGCTCCAGAGCTTGACCCTCG GCGACCTTGATGTCATTGCCAGGGCCGTTGACCAACAGATCAAGGACGTTGACCGAAAGCTGACTGAGATCGCCCGGAAAGGCGGCGGTGGCGGAGGTGG TGGGTCCACCACCGCCGCCAATGGGGTTAATAATCTGGAGGGGCCATTACAAATGATGACGCCGGCAAATGGTGGTGGGATGGTGGGGCCCGCCAAGGAG GAGTTCATGGAGAATGTTAATGACACTCTTCAGAGGCAGCTGTGGTTCATGGAGATGATGAATAGTAATGCTCCGGCTCCGTTGACGGCGGTGGAGCAGC AGCAGATGGGGTTTATGGGGGGAGAGATGATGATGAATAATGTGGCGGCGGAGGGTGGTGGTGGCGGCGGCGGGGGATTTGGGGAGGGTAGTTCTTCAAA TTGGGTTGGGAATAATGGGGTTATTAATGGTAATAACAATAGTAATCCCTTCTGGTCTGGTAATTATCATTGTTATCATTGA
AA sequence Show only first row Show all	>Lus10032108 pacid=23161259 polypeptide=Lus10032108 locus=Lus10032108.g ID=Lus10032108.BGIv1.0 annot-version=v1.0 MTRKKVKLAYIANDSARKATYKKRKKGLMKKVSELSTLCDIQACAIVYGPYDTQPETWPSTPAGVHQVLSRFRKVPQMEQCKKMVNQEKFLGERIKKAAE QLRKQKRDNDEKMVQNALFECLTGRISLQSLTLGDLDVIARAVDQQIKDVDRKLTEIARKGGGGGGGGSTTAANGVNNLEGPLQMMTPANGGGMVGPAKE EFMENVNDTLQRQLWFMEMMNSNAPAPLTAVEQQQMGFMGGEMMMNNVAAEGGGGGGGGFGEGSSSNWVGNNGVINGNNNSNPFWSGNYHCYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10032108 [exp]	0	1
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Lus10030680 [exp]	7.1	0.7826
					Lus10029354 [exp]	54.0	0.6785
AT3G14470			NB-ARC domain-containing disea...		Lus10040208 [exp]	56.9	0.6092
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10000792 [exp]	110.2	0.6418
AT4G33985			Protein of unknown function (D...		Lus10002400 [exp]	127.0	0.6146
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	140.4	0.5965
					Lus10037199 [exp]	237.5	0.5737
AT5G59100			Subtilisin-like serine endopep...		Lus10002964 [exp]	239.0	0.5645
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10018917 [exp]	254.0	0.5813

Compare expression of checked genes

Lus10032108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.