Plant FIBer expression Database

Lus10032110 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40640 600 / 0 unknown protein
AT3G27390 599 / 0 unknown protein
AT4G12680 392 / 5e-130 unknown protein
AT4G37030 342 / 1e-110 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014575
[exp]
936 / 0 AT5G40640 714 / 0.0 unknown protein
Lus10022317
[exp]
772 / 0 AT3G27390 722 / 0.0 unknown protein
Lus10014881
[exp]
470 / 4e-163 AT3G27390 380 / 3e-128 unknown protein
Lus10016056
[exp]
392 / 1e-129 AT4G12680 749 / 0.0 unknown protein
Lus10025177
[exp]
381 / 4e-125 AT4G12680 738 / 0.0 unknown protein
Lus10011021
[exp]
373 / 2e-122 AT4G37030 698 / 0.0 unknown protein
Lus10001003
[exp]
368 / 2e-120 AT4G37030 707 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G338900
[exp]
696 / 0 AT5G40640 718 / 0.0 unknown protein
Potri.007G042400
[exp]
374 / 6e-123 AT4G37030 707 / 0.0 unknown protein
Potri.007G035400
[exp]
355 / 7e-116 AT4G12680 411 / 9e-138 unknown protein
Potri.014G170800
[exp]
354 / 3e-115 AT4G12680 685 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10032110 pacid=23161314 polypeptide=Lus10032110 locus=Lus10032110.g ID=Lus10032110.BGIv1.0 annot-version=v1.0
ATGGAGCGTCCAAAGGGATTCTTCGCTACTCTATTGTCATTCTTGCTGTTTCTCCCTTACTTCGCTGGGCTGCTTATTCTGGGTACCATTAAGGGTATCA
TTATTTGTCCAGTGATCTTCCTTTTCATGGTGATTGGAAATTTTGGTATCATATTGAGCCTTTGGCCATTTCATATCTACTGGACTTACTATTCCATTCT
CAGATCTAAACAGCTAGGACCATTCCTGAAGCTTATTCTCTGCATTTGCTTACCTGGTGTCTTGCTTCTGTGGCTGGTGCTTGGCCTTGCTGGGAGTGTT
GTTGGTGGAGCATTGTACGGTCTACTTTCACCGATTTTTGCCACTTTTGATGCTATTGGAGAAGGGAAAAGCAATAAATTATATCACTGCTTTTGTGACG
GAACTGTTGATACGTTGAGAGGTTGTTTCACCATTGTCAGAGACTTTGGTGATGTGTGTTATCATTCTTACTCCTCGATTATGGATGACTTACGACAGAA
AGGGCCTGCCGATGGGAAGTACTATGAGATCAGATTGCTTCAGCTTCCCGGTGCCCTCATTGCCGGTGCACTTGGTGTTTTGGTCGACTTCCCGATGGTC
TCACTCATAGCCTTATGCAAAAGCCCGTTCATGTTATTTAAGGGATGGCATCGCTTGTGTCATGACCTTTACGGTAGAGAAGGCCCTTTCTTGGAAACAA
TCTGTGTGCCATTCGCTGGTCTTGCGATCTTGCTGTGGCCACTGGCTGTTGTGGGAGCAGTTTTGGGATCGATGGTCTCGAGCATCTTTCTCGGTGCTTA
TGCAGCTGTGATTTCCTATCAGGAGTCCTCTTTTTGGTTGGGACTTCGTTACATTGCTGCATCGTTGGCCATCTATGATGAGTACAGCAATGACGTTCTT
GACTTGCCAGAAGGATCTTTCTTTCCCAGGCCAAAGTACAGGAAAAACTCCGAGGGCACTTCCCGCTCATCCTCTTTTACAAGACCTACTTCATCTTTCA
GGAAATCTTTCTCACGTTCCATTTCGATAGCTGGCCCTATGGTTGACGTGAAACCATTTGAGCTTCTTGAAAGCTTGTTTAAGGATTGTCAAGTCCACGG
AGAGAAATTTCTGTCTCACGGACTTATAACTCAACAAGACATTGATGATGCCAAGTCCGGAAACGGAAGTAGAGTGATCAGCACCGGCTTACCGGCTTAC
TGCCTTCTTCAGGATCTATTGAGATCTGCCAAGGCCAATTCTGATGGCATTTTGCTAAGTGATAATGTTACTGAGATAACAAGCACAAACAGGCCGAGAG
ACGCCTTTTTTGACTGGTTTCTTAATCCATTTCTGATCATCAAAGACCAGCTTAAAGCCCAGAACCTTTCCCAGTCAGAAGAAGATTACCTTTGCAAATT
AGTGCTGCTGAATGGTGATCCTGTCAAGATGAAAGCTTCAACGATCGGCCCTCTACCCGAGACCGAGCGCAAACGAGCTGAACTCGATGCATTAGCTAGA
AGGCTTCAAGGCATTGTGAAGTCGATCTCGAGGTTCCCAACAGCGAGGAGGAACTACCAAAACCTCGTCAACAACCTCTCCGATAACCTTGCCCGGAAGA
ATGGCAATGGCCGCAAGAATTTCTCGCGGTCGAAGAGCGCATTTGCTAGGGTCTTCAGCCAGAGGTCTATGAATCGGAAGACTAGCTTCAATCACAGTTC
TGATTCAGAGTCTCAACGACAAGCTTCTTCCAGGAATGTAGATGTTATATGA
AA sequence
>Lus10032110 pacid=23161314 polypeptide=Lus10032110 locus=Lus10032110.g ID=Lus10032110.BGIv1.0 annot-version=v1.0
MERPKGFFATLLSFLLFLPYFAGLLILGTIKGIIICPVIFLFMVIGNFGIILSLWPFHIYWTYYSILRSKQLGPFLKLILCICLPGVLLLWLVLGLAGSV
VGGALYGLLSPIFATFDAIGEGKSNKLYHCFCDGTVDTLRGCFTIVRDFGDVCYHSYSSIMDDLRQKGPADGKYYEIRLLQLPGALIAGALGVLVDFPMV
SLIALCKSPFMLFKGWHRLCHDLYGREGPFLETICVPFAGLAILLWPLAVVGAVLGSMVSSIFLGAYAAVISYQESSFWLGLRYIAASLAIYDEYSNDVL
DLPEGSFFPRPKYRKNSEGTSRSSSFTRPTSSFRKSFSRSISIAGPMVDVKPFELLESLFKDCQVHGEKFLSHGLITQQDIDDAKSGNGSRVISTGLPAY
CLLQDLLRSAKANSDGILLSDNVTEITSTNRPRDAFFDWFLNPFLIIKDQLKAQNLSQSEEDYLCKLVLLNGDPVKMKASTIGPLPETERKRAELDALAR
RLQGIVKSISRFPTARRNYQNLVNNLSDNLARKNGNGRKNFSRSKSAFARVFSQRSMNRKTSFNHSSDSESQRQASSRNVDVI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27390 unknown protein Lus10032110
[exp]
0 1
AT4G37850 bHLH bHLH025 basic helix-loop-helix (bHLH) ... Lus10003488
[exp]
1.7 0.8939
AT5G02030 HD PNY, BLR, BLH9,... VAAMANA, REPLUMLESS, PENNYWISE... Lus10021498
[exp]
2.2 0.9162
AT5G48500 unknown protein Lus10009584
[exp]
3.2 0.8836
AT3G50140 Plant protein of unknown funct... Lus10037762
[exp]
4.5 0.8749
AT2G20100 bHLH basic helix-loop-helix (bHLH) ... Lus10023669
[exp]
4.5 0.8909
AT3G09050 unknown protein Lus10027783
[exp]
5.1 0.8970
AT4G16650 O-fucosyltransferase family pr... Lus10007792
[exp]
8.4 0.8789
AT5G60200 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) Lus10007774
[exp]
8.5 0.8753
AT1G29700 Metallo-hydrolase/oxidoreducta... Lus10021698
[exp]
9.2 0.8728
AT3G19340 Protein of unknown function (D... Lus10031975
[exp]
10.6 0.8754

Lus10032110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.