Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40650 467 / 3e-168 SDH2-2 succinate dehydrogenase 2-2 (.1) AT3G27380 453 / 7e-163 SDH2-1 succinate dehydrogenase 2-1 (.1.2) AT5G65165 322 / 2e-110 SDH2-3 succinate dehydrogenase 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014573 [exp] 582 / 0 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10022319 [exp] 526 / 0 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014879 [exp] 523 / 0 AT5G40650 467 / 2e-168 succinate dehydrogenase 2-2 (.1) Lus10028289 [exp] 323 / 7e-111 AT5G65165 435 / 1e-154 succinate dehydrogenase 2-3 (.1) Lus10040198 [exp] 296 / 2e-100 AT5G65165 391 / 1e-137 succinate dehydrogenase 2-3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338400 [exp] 451 / 9e-162 AT5G40650 444 / 4e-159 succinate dehydrogenase 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032113 pacid=23161212 polypeptide=Lus10032113 locus=Lus10032113.g ID=Lus10032113.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGTTTACTGAGACGCGGCGTTTCTCTAGCGAGGACGACTCCATCTCCGATGGCGGCAAGGCTCGTTTCCGCCAGGCCTCACGCGTCGGAGG CGGAGGCGCAGAAGAACGAGCCGACGGCGGCGCAGTCCTCCGGCTCCGACGTCAAGGTCTTCCAAATCTACCGATGGAGCCCTGAAAATCCGTCCAAGCC GGAGCTCCAGGACTACAAGATCGACCTAAAGCAGTGCGGGCCCATGGTCCTTGACGCTCTAATCAAGATCAAGAACGAGATGGATCCGTCGCTCACCTTC CGAAGATCCTGCCGCGAAGGCATATGCGGTTCGTGCGCGATGAACATCGACGGCTGCAATGGCCTCGCGTGCCTGACGAAGATCTCCTCCGGCAAGCCTA CGATGATCACGCCTCTGCCTCATATGTTCGTGATTAAGGATCTGGTCGTCGACATGACCAATTTCTACAACCAGTATAAGAGCATTGAGCCGTGGCTGAA GCGTAAGAACCCTCCTGAGGTTGCCGGGAAGGAGATTCTGCAGAGCAAAAAGGATAGGTCGAAGCTGGATGGGATGTATGAGTGCATTTTGTGCGCATGC TGTAGCACTTCGTGTCCCAGCTATTGGTGGAATCCTGAAGCTTACTTGGGTCCTGCTGCACTGCTTCATGCTAACAGGTGGATCAGTGACAGCCGTGATG AATACACAAAGGAGCGACTGGATGCGGTAAACGATGAGTTTAAGCTGTATAGGTGCCATACTATCTTGAACTGTGCTCGTGCCTGCCCCAAAGGGTTGAA CCCTGGAAAGCAGATTCAGAATATTAAGGGTCTTCAGATCAGCGGTGCTCCATGA
AA sequence Show only first row Show all	>Lus10032113 pacid=23161212 polypeptide=Lus10032113 locus=Lus10032113.g ID=Lus10032113.BGIv1.0 annot-version=v1.0 MAASLLRRGVSLARTTPSPMAARLVSARPHASEAEAQKNEPTAAQSSGSDVKVFQIYRWSPENPSKPELQDYKIDLKQCGPMVLDALIKIKNEMDPSLTF RRSCREGICGSCAMNIDGCNGLACLTKISSGKPTMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPEVAGKEILQSKKDRSKLDGMYECILCAC CSTSCPSYWWNPEAYLGPAALLHANRWISDSRDEYTKERLDAVNDEFKLYRCHTILNCARACPKGLNPGKQIQNIKGLQISGAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	0	1
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	1.4	0.9595
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	2.0	0.9643
AT3G44150			unknown protein		Lus10029366 [exp]	2.8	0.9538
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	3.2	0.9508
AT1G30890			Integral membrane HRF1 family ...		Lus10027039 [exp]	4.5	0.9389
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10036976 [exp]	4.6	0.9544
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	6.5	0.9498
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	7.7	0.9153
AT2G30050			transducin family protein / WD...		Lus10037571 [exp]	8.0	0.9324
AT1G30890			Integral membrane HRF1 family ...		Lus10025577 [exp]	9.8	0.9361

Compare expression of checked genes

Lus10032113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.