Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40670 309 / 6e-107 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014572 [exp] 419 / 2e-150 AT5G40670 418 / 3e-149 PQ-loop repeat family protein / transmembrane family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070300 [exp] 322 / 9e-112 AT5G40670 412 / 7e-147 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.017G070401 [exp] 86 / 5e-22 AT5G40670 99 / 4e-27 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF04193 [flax] [poplar] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Lus10032114 pacid=23161160 polypeptide=Lus10032114 locus=Lus10032114.g ID=Lus10032114.BGIv1.0 annot-version=v1.0 ATGGCTTCGTGGAATTCGATTCCCCTAGAAATAACGTACCAGACACTGGGTTGGCTGGCTTTCGTCGCATGGTCCATCAGTTTCTATCCTCAGCAGCAGT ACTTTCAAAAGTATGGCTATGACCAGATGATACCGGTTGCTGCAAATGATGTTGCTTTCTCAATACACGCAGTTGTATTGACACTGATCACGCTGTTCCA AGTTTTTATCTATGAACGCGGAACTCAGAAGATCTCCAGGATCTCAATAGGAATTGTTAGTGTCGTATGGCTACTCGCTGCAGCTTGCTTTTTTGTTGCT TTACCTAGCCATTCTTGGCTCTGGCTCATCTCCATCTTTAACTCGATTCAAGTCTTCATGACGGTCATTAAGTATATTCCACAGGTGGTAATGAATGTCA TTCGTAAGAGCACCGAGGGATTCAGCATTGGAAACATTTTGCTTGATTTCACCGGCGGTGTTGCCAATTATGCACAAATGGCAGTACTTTCTATCGACCA AAATTCTTGGGTCAATTTCTATGGCAACATAGGGAAGACACTACTCTCTTTGGTTTCGGTATTCTTCGACATTCTATTCATGGTGCAGCATTACATCGTG TATCGAGCGAAGGAGATCAGCGACGCTCCTGGGAAGGCGAACAGTGATCCGCTTATCGAATCTTCTGTTGAAGAGCCGCAGACTGGAAGTGTTGTTTGA
AA sequence Show only first row Show all	>Lus10032114 pacid=23161160 polypeptide=Lus10032114 locus=Lus10032114.g ID=Lus10032114.BGIv1.0 annot-version=v1.0 MASWNSIPLEITYQTLGWLAFVAWSISFYPQQQYFQKYGYDQMIPVAANDVAFSIHAVVLTLITLFQVFIYERGTQKISRISIGIVSVVWLLAAACFFVA LPSHSWLWLISIFNSIQVFMTVIKYIPQVVMNVIRKSTEGFSIGNILLDFTGGVANYAQMAVLSIDQNSWVNFYGNIGKTLLSLVSVFFDILFMVQHYIV YRAKEISDAPGKANSDPLIESSVEEPQTGSVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40670			PQ-loop repeat family protein ...		Lus10032114 [exp]	0	1
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	8.7	0.8931
AT4G15563			unknown protein		Lus10012807 [exp]	13.2	0.8850
AT3G43230			RING/FYVE/PHD-type zinc finger...		Lus10039922 [exp]	13.7	0.8881
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	32.7	0.8543
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	35.8	0.8749
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	37.7	0.8489
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	40.7	0.8859
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	45.6	0.8785
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	47.7	0.8718
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	48.9	0.8626

Compare expression of checked genes

Lus10032114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.