Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01710 76 / 8e-15 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G27350 58 / 4e-09 unknown protein AT3G26050 58 / 8e-09 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G40700 55 / 3e-08 unknown protein AT1G23060 47 / 1e-05 unknown protein AT1G24160 47 / 2e-05 unknown protein AT1G70950 46 / 6e-05 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70100 45 / 8e-05 unknown protein AT2G35880 43 / 0.0003 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 43 / 0.0004 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014571 [exp] 692 / 0 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10037054 [exp] 58 / 1e-08 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029213 [exp] 49 / 2e-06 AT1G24160 135 / 2e-36 unknown protein Lus10010725 [exp] 50 / 3e-06 AT1G70100 213 / 2e-62 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336300 [exp] 283 / 3e-89 AT3G27350 124 / 1e-31 unknown protein Potri.008G180900 [exp] 59 / 7e-09 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 54 / 2e-07 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G192800 [exp] 52 / 8e-07 AT1G70100 197 / 6e-57 unknown protein Potri.010G038100 [exp] 50 / 2e-06 AT1G70100 196 / 4e-56 unknown protein Potri.010G113000 [exp] 50 / 4e-06 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 48 / 1e-05 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 44 / 0.0002 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.018G027500 [exp] 42 / 0.0008 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10032115 pacid=23161072 polypeptide=Lus10032115 locus=Lus10032115.g ID=Lus10032115.BGIv1.0 annot-version=v1.0 ATGGGGGAAACTGCTACTTGTCTCATCCTCCACCACCACCACCAACAACCCTTCTCCTACGCCGCAGGCATTTCTAACGAATCAGTTTCATTTGGGAGGT TTAAGTCGGAGTCACTGTCATGGGAGAAATGGTCATCTTTCTCTTCTAGCAACAAATATGTCGAGGAGGCTGAGAAATTCTCCCGCCCTGGCTCTGTTGC TGAGAAAAAAGCTTTCTTTGAGGCTCATTACAGAGATCTTGCTGCAAAAAAGGCGGCTGCTGCTGCTGCCAAAGCAGCAGAAGAGGCAGCGGCTGCCGCC GCTGCTGTTGCGGAAACAAATTGTGTGGAATCCGAACCCAATATGGAAGATGAATCAAACCCATCACCAGATAAGCAAGATGTTGAGTTTAGTTGCGTAA AGGTGGAGGCTTTGAGCCAGGTTGATGAAGCTGTTGATAGCAAGGTTGAAGAAGATGGTACTAAAGATGCTGAGAATTCAGTTCACAAACAAATGGAAAA GCCATTGTTGAAGGATTTCATGGCTAACGATTCAGACTCCTCAATGATGATGAAGAGGAAGCCTTCAGTTTCTTTCTCAAGGACTCTGGTTTTTGGTAAG GCAGCAGCTTCATCATCATCATCCAAAGTTGCAGCTTTTTCTTCACCGGCGGCTAAATGCCCTGTAGCTGCTACTCCAATGAGCAAGAGATCGACGCCAA AATCAACTCACAGCTGCAACAAGGCATCAATGAACTTCACTCCAGTGAGGGAAATCAACAGACTAACTTCCACCATTATCAGGAAGATCGATGGTTGCTC TAGAGCTTCTTATAAGGCTGCCAAGGATTTCTCCTCAATTACCCCTCTAAGAACTCCAACTGTGGCATGTAGAACAGACGAATCCAGGCATCCTCAAATG ACTCCTCAGTCCGAAACCTGGAGGGCAAGAACACCTCTTCATCCATCGGCAGCAACCACTGAAAGCAAGCCAGTTAGGCCAAGGTGGCATTTCCTCCCTA CAGATTGCTCCAAGTTCATGAGTGGCAGCAGAAACAAATCCCAGGACTCACCAAGTTTTACCGCACCTTTCAGAACAGAAGAAAGAGCTACAAGGCGGAA AAAGAAGCTAGAAGAGAAGTTCAATGCTAAACAAGAACAGAAAGTTCAGTTACAAGCAACAATCAAGGAAAAGGCAGAAACAGAGATTAAGAAGTTCCGG CAGAGCCTTTGCTTCAAGGCCAGGCCATTACCAGGATTCTACAAGCAAATAGTAACACCCAAGAACCAACTTCACAAGGTTCCATTGACGGATTCTCAAC CGTCAGAACTGGAGATTCAGGATCCTTCAATGGTGAAGATTACTACTCCACATATGATTGAGAGAAGTGCAAGCAAGAACAGCGGCAGAAATGTGAAGAA GAACGAAAACAACAACAATCCCAGGTCTCTACGTGCAAGGTTGAATGCAACTGCCACTGAGAATACTACTGCTTCTCGTCAGCAAACATCCAAAACTGCA AGTTGA
AA sequence Show only first row Show all	>Lus10032115 pacid=23161072 polypeptide=Lus10032115 locus=Lus10032115.g ID=Lus10032115.BGIv1.0 annot-version=v1.0 MGETATCLILHHHHQQPFSYAAGISNESVSFGRFKSESLSWEKWSSFSSSNKYVEEAEKFSRPGSVAEKKAFFEAHYRDLAAKKAAAAAAKAAEEAAAAA AAVAETNCVESEPNMEDESNPSPDKQDVEFSCVKVEALSQVDEAVDSKVEEDGTKDAENSVHKQMEKPLLKDFMANDSDSSMMMKRKPSVSFSRTLVFGK AAASSSSSKVAAFSSPAAKCPVAATPMSKRSTPKSTHSCNKASMNFTPVREINRLTSTIIRKIDGCSRASYKAAKDFSSITPLRTPTVACRTDESRHPQM TPQSETWRARTPLHPSAATTESKPVRPRWHFLPTDCSKFMSGSRNKSQDSPSFTAPFRTEERATRRKKKLEEKFNAKQEQKVQLQATIKEKAETEIKKFR QSLCFKARPLPGFYKQIVTPKNQLHKVPLTDSQPSELEIQDPSMVKITTPHMIERSASKNSGRNVKKNENNNNPRSLRARLNATATENTTASRQQTSKTA S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	0	1
AT4G31880			unknown protein		Lus10017121 [exp]	1.4	0.9529
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	2.2	0.9536
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	4.9	0.9529
AT3G22520			unknown protein		Lus10041202 [exp]	6.5	0.9351
AT3G51290			Protein of unknown function (D...		Lus10028431 [exp]	6.5	0.9448
AT5G12360			unknown protein		Lus10039048 [exp]	6.7	0.9483
AT2G43990			unknown protein		Lus10027108 [exp]	6.9	0.9216
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	9.8	0.9455
AT4G17000			unknown protein		Lus10035651 [exp]	10.0	0.9526
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	10.5	0.9396

Compare expression of checked genes

Lus10032115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.