Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40710 259 / 2e-86 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G63280 244 / 5e-81 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014570 [exp] 432 / 6e-155 AT5G40710 254 / 5e-85 zinc finger (C2H2 type) family protein (.1) Lus10014794 [exp] 246 / 4e-82 AT5G63280 257 / 3e-86 C2H2-like zinc finger protein (.1) Lus10001106 [exp] 197 / 2e-63 AT5G63280 221 / 5e-73 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336500 [exp] 290 / 1e-98 AT5G40710 343 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.015G090300 [exp] 267 / 9e-90 AT5G63280 320 / 2e-110 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032116 pacid=23161307 polypeptide=Lus10032116 locus=Lus10032116.g ID=Lus10032116.BGIv1.0 annot-version=v1.0 ATGGCAATTTTCGCATCAAGATTCTGCATTTTATTTATCTTTCTCTGTATTGCAATCTCTTTGCAATCGAGGAACTGTCATTCTTTCTCTGCTGCTGTAT TTCAGGGTAATCAAGGATCTTCTGTCCCAAGAACCCTAGATGAGGAAAAGGGGAATGCTCATGAGGTGCATTGTTCAAGAGAGAGGAGTAGGGCAGCCTG GAAAATTGTTGAACAGTACTTAATGCCCTTTGTTGAGAAAGAAAAACACAGCATGTCAAAGAAGTGTCCACTTCACCCTGAGAATGATCTCTACCGTCTG CAAGAGAAGAACAAGATCCGGGAAGACGTAAACCTATGGCGATGTGGCTACTGCAAGAAGACGCTATACGAAGAAAAAAAACTCGACAAGCATCTTGATG AATGGCACTTTGATGTTCTAGATGTGGGTCCCGGCAGGTGCTTGGCAGATTCGTGTGGCGCATTACATTGTGACCTTGTGATGGATTCAACGCGCAAAAC CAAGTGCAATCCAGCAGCTGCTGCAAGGAATAAACATCTATGTGAGAGTTTGGCCGATCGTTGCTTTCCGGTCAATGAGGGTTCCTCAGCTCGTCGTCTT AATGACCTTTTCTTACGGCAGTTTTGTGATGCCCACACTTGCAAGGGAGGCCGGAAACCCTTCTCAAGAGGCGGCAAGAAGAAGAGAAACATACTCTATA TCGTAGCTTCGGTGCTGGTTTTGCTTTTGCTATCGCTCTTCTACGGCTTCCTGTACTTGTATCAGAGGTGGGTGGTTACTACTACTTATAGGGTAGCTGA ATGA
AA sequence Show only first row Show all	>Lus10032116 pacid=23161307 polypeptide=Lus10032116 locus=Lus10032116.g ID=Lus10032116.BGIv1.0 annot-version=v1.0 MAIFASRFCILFIFLCIAISLQSRNCHSFSAAVFQGNQGSSVPRTLDEEKGNAHEVHCSRERSRAAWKIVEQYLMPFVEKEKHSMSKKCPLHPENDLYRL QEKNKIREDVNLWRCGYCKKTLYEEKKLDKHLDEWHFDVLDVGPGRCLADSCGALHCDLVMDSTRKTKCNPAAAARNKHLCESLADRCFPVNEGSSARRL NDLFLRQFCDAHTCKGGRKPFSRGGKKKRNILYIVASVLVLLLLSLFYGFLYLYQRWVVTTTYRVAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	0	1
AT4G31860			Protein phosphatase 2C family ...		Lus10003423 [exp]	2.0	0.9068
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	2.8	0.8976
AT5G25265			unknown protein		Lus10041028 [exp]	5.9	0.8813
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	7.5	0.8931
AT5G09310			unknown protein		Lus10037415 [exp]	7.5	0.8863
AT4G32760			ENTH/VHS/GAT family protein (....		Lus10022140 [exp]	11.8	0.8766
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10023242 [exp]	13.4	0.8853
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	14.1	0.8611
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037241 [exp]	14.1	0.8799
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	16.9	0.8781

Compare expression of checked genes

Lus10032116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.