Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27330 559 / 0 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G40720 550 / 0 Domain of unknown function (DUF23) (.1) AT1G27200 429 / 3e-144 Domain of unknown function (DUF23) (.1) AT4G37420 263 / 3e-80 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014568 [exp] 1013 / 0 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030815 [exp] 422 / 2e-141 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 412 / 2e-137 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 407 / 1e-135 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 402 / 5e-134 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013221 [exp] 296 / 9e-93 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 271 / 1e-83 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 239 / 3e-71 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 138 / 9e-35 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336766 [exp] 667 / 0 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G192000 [exp] 412 / 2e-137 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 408 / 8e-136 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G252100 [exp] 291 / 1e-90 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10032118 pacid=23161168 polypeptide=Lus10032118 locus=Lus10032118.g ID=Lus10032118.BGIv1.0 annot-version=v1.0 ATGAAGGATCACCGGCGGAGGCGTGACGTCATCTGCAGCAGGTTTTTCTGGTGCACTCTCTTCTTCGTCGTTTCCTGCGTCCTCTTGACCGGATTCAATT TCTCCTCCTCCTCCCGCTTTCTCTTCTCCCTTCCTACTGCAGAAAGGCTGCACCCGGAGATATTGCCCAGATGGCGGACTATGGACGCCGTCTCCGCGGC CGATTTATCTAATCGGAAGTTGGACCCCAACAGCAAGATATCGATTCGGGACGCCGTTATCTTTCCTGACCAAGTTCTTATATTCCTAAACTACCCTCAC TCCTCCACGTCAGCTCGATTGTCGTTGACTCGAGACGACGTCCTCGACTGCGTTTACTTGAACTCATCTTCCTCCTCGCGGAGGATACACCGCCAGCCGC CGTACCGCGTGGACTGCGACATCGTGCGGTGTCCGCTGGATCCACGTGGCGCGATCGTGTCTTCCCTCTCTTTGAAATCATACGGCGGAAGTGGGGTTTT GCTGCCTGCGGTCCCCGCTCGTACGTGGCGCACGCTGGTTTATGAAGCTATATTCGACCGCGACAATACTACGGTGGTCTTCGTGAAGGGGCTCAATCTA CGGCCCGATAAGCTCTACGATGGCAACAGGTTTGAGTGCGTGTTCGGCTGGGATTCCCGGCGGCCCCGGTTGAATTTACGATCCGAAGTCATCTCCATCG CTCAAGAGATCGTACGGTGCGAAACGCCTCTCAGCCTCCTCTCCTCCGTCACGTCATTCAACGGTTCGGTCAAGGTATCGATTCGGGTTAAAGGCAGGGG AACGTTCCGTTCAGTAGCCCGCCCCAAACCCCTACCAGAACCCGACTCGCAAAACACAACCAAACCGAATCAATTATGCATATGCACTATGATCAGGAAT CAGGCGAGATTCATGAAAGAATGGGTGATGTACCACGGCGAAATGGGAGTTGAGAAATGGTTCATCTATGACAACAACAGTGACGACGATCTCAAATCAA CGATCGGGTCGTTATCCGATTCCAGGTTCAACATTACCCGACACATCTGGCCGTGGGTGAAAAGCCAAGAAGCCGGGTTCGCTCACTGCGCGATTCGAGC ACGGCCGTGGTGCGAATGGGTTGGATTCATCGATGTGGATGAGTTCCTCAACGTCCCCTCGGGTCAATCATTATCGGAGGCTTTGAAGAACCAAACCGAA ACTGTTTCTTATCGAGTAGGGGAAATTCGGGTTCCCTGCCACAGTTTCGGTCCATCCGGGTTGACCCGGGTCCCGACCCAAGGCGTGATAGCCGGGTACA CATGCCGGCTGGTATGGCCGGAGAGGCACAAGAGCATAGTGAGACCGGAGGCGTTGAACTCGTCGCTAATCAATGTGGTGCACCATTTCCATCTCCGGGA AGGATTCGGACACTTGGATGTGGATCGAGGGTGGATGGTCATCAATCACTACAAGTACCAAGTGTGGGAAGTGTTCAAGGAGAAGTTCTACAGGAGAGTG GCGACTTATGTGGCCGACTGGCAGGATGAATTGAATGTCGGGTCGAAAGATCGAGCCCCCGGATTGGGGACGAAGGCGGTGGAGCCGGCGGATTGGTCGA GTAGGTTCTGTGAGGTGAATGACACAGGGCTGAAGGATTTTGTTATGCGGAGGTTTTCGGACCCGTTGACACAGGTTCTGCCGTGGGAGGAGGATGGAGC TGAAAAGATGAGGCATGGAGGAGAGTTTTGGTAA
AA sequence Show only first row Show all	>Lus10032118 pacid=23161168 polypeptide=Lus10032118 locus=Lus10032118.g ID=Lus10032118.BGIv1.0 annot-version=v1.0 MKDHRRRRDVICSRFFWCTLFFVVSCVLLTGFNFSSSSRFLFSLPTAERLHPEILPRWRTMDAVSAADLSNRKLDPNSKISIRDAVIFPDQVLIFLNYPH SSTSARLSLTRDDVLDCVYLNSSSSSRRIHRQPPYRVDCDIVRCPLDPRGAIVSSLSLKSYGGSGVLLPAVPARTWRTLVYEAIFDRDNTTVVFVKGLNL RPDKLYDGNRFECVFGWDSRRPRLNLRSEVISIAQEIVRCETPLSLLSSVTSFNGSVKVSIRVKGRGTFRSVARPKPLPEPDSQNTTKPNQLCICTMIRN QARFMKEWVMYHGEMGVEKWFIYDNNSDDDLKSTIGSLSDSRFNITRHIWPWVKSQEAGFAHCAIRARPWCEWVGFIDVDEFLNVPSGQSLSEALKNQTE TVSYRVGEIRVPCHSFGPSGLTRVPTQGVIAGYTCRLVWPERHKSIVRPEALNSSLINVVHHFHLREGFGHLDVDRGWMVINHYKYQVWEVFKEKFYRRV ATYVADWQDELNVGSKDRAPGLGTKAVEPADWSSRFCEVNDTGLKDFVMRRFSDPLTQVLPWEEDGAEKMRHGGEFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	0	1
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	3.5	0.9248
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	3.5	0.9071
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	5.3	0.9156
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	5.5	0.8907
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	8.2	0.9027
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	8.7	0.8928
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10036882 [exp]	9.2	0.8739
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	10.7	0.8586
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10018852 [exp]	11.3	0.8680
AT2G37730			Protein of unknown function (D...		Lus10010869 [exp]	12.0	0.8869

Compare expression of checked genes

Lus10032118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.