Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27330 230 / 5e-68 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G18660 76 / 1e-14 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G38920 46 / 3e-05 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related AT1G66040 46 / 4e-05 ORTH4, VIM4 VARIANT IN METHYLATION 4, ORTHRUS 4, Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G66050 46 / 4e-05 ORTH5, VIM2 VARIANT IN METHYLATION 2, ORTHRUS 5, Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G07200 44 / 4e-05 RING/U-box superfamily protein (.1.2) AT5G39550 45 / 6e-05 ORTH1, VIM3 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G32950 45 / 6e-05 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G08590 44 / 0.0001 VIM6, ORTHL, ORL1 VARIANT IN METHYLATION 6, ORTHRUS-LIKE 1, ORTH-LIKE 1, ORTHRUS-like (.1.2) AT5G48655 43 / 0.0001 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022324 [exp] 319 / 3e-106 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10014874 [exp] 85 / 3e-20 AT3G27330 86 / 3e-21 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10015722 [exp] 79 / 8e-16 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10019075 [exp] 79 / 8e-16 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10022569 [exp] 51 / 3e-07 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10014873 [exp] 50 / 1e-06 ND 39 / 0.003 Lus10039127 [exp] 47 / 2e-05 AT5G39550 776 / 0.0 VARIANT IN METHYLATION 3, ORTHRUS 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10015986 [exp] 46 / 2e-05 AT2G38920 389 / 1e-135 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Lus10012290 [exp] 46 / 2e-05 AT2G38920 392 / 5e-137 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336832 [exp] 292 / 3e-96 AT3G27330 235 / 2e-69 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G068100 [exp] 78 / 2e-15 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Potri.016G064600 [exp] 50 / 9e-07 AT2G38920 414 / 2e-145 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.003G162400 [exp] 49 / 4e-06 AT1G57820 813 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.001G067700 [exp] 49 / 4e-06 AT1G57820 811 / 0.0 VARIANT IN METHYLATION 1, ORTHRUS 2, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Potri.006G198600 [exp] 47 / 8e-06 AT2G38920 390 / 3e-136 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related Potri.011G056300 [exp] 47 / 1e-05 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.016G058300 [exp] 47 / 2e-05 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.001G082200 [exp] 45 / 3e-05 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.014G191400 [exp] 44 / 6e-05 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032119 pacid=23161304 polypeptide=Lus10032119 locus=Lus10032119.g ID=Lus10032119.BGIv1.0 annot-version=v1.0 ATGCCGGGGGAGGATCCGACTCACAGTCCCCCAGATCCGGCCGAGAACGGCGGTGCCGACCAGAACTTGGAGACCATGTTCAGCCCGAGGTTCAAATCTG TAGCCGCCATGGCTGGGTGGGACGAAGAGTCCATCCTATTCGCCACCCTTATCGTGGAAGACACTCCCGATCGCGATTTAAACCTCAGCAAAAGACGTGA TCCTCTTTTTAAGGCTCCTCCTCCTTCCTCCGATTCCAAGAGGAAACGGAATGGTCAGAGGAGGAATCCCATTCCAATTCATGTGCCTTTTCTTAATCTC GACGACGAAGAGGAACCACCGCCCATACAAGAAGAGAATATCAAGAAGAAGAAGAATGAGGCAAAAGTGGTTGTGACGGAAGAAGAAGAAGAAAAGAAAG TGTACAAGGATGGAGTGATTGGAGAAAGTTCATGCTCAGATGCTGCTGTTATTCCTTGCTTGGACAAGCTTCGAGAAGAACTTTCTTGTGCTATTTGTCT GGAGATCTGCTTTGAACCTAGCACCACATCTTGTGGACACAGTTTCTGTAAGAAATGTTTGAGATCAGCTGCTGACAAATGCGGGAAGAAGTGTCCCAAA TGCAGACAACTAATAAGCAATGGGAGATCATGCACAGTGAACACAGTTCTATGGAACACAATACAGCTTCTATTTCCAAAAGAAGTGGAAGCAAGGAAGG TAGCCGAGGCCTCGGCCACTGTTGTCCGAAACAAAAGAGCCAACAATCATGAGATAAGGAAGTTTAGTCGAGGCGGTGTTAATCCTAGTGGACAAAGGAT TTCAACTTGGGTGCAGAATCAGGATCCTTCTGCAGTATCCCAGAGGTTGCATGAGGATTCTGCATTAGTTAGCAGTAGGGTTCAGAGAGTAGAGGCGGCA GCGAGTGGGAGAAGAAGAAGTAGAACTTCAAGAGCTGGAGAAGGGCAGATGATACCAAGCCGAGATGGAGATTCTGCTTTAGCCTTACGCCTTCAAAGGC AAGAGTTCATTGAAGGGTTTAGCAGGGAAACTGATCAAGGGTCAGCTGGAAGAGGAGGATTGTCAAGGGCTAGAGCAAACTTGAGAGCCATGGCATCTAG AGCTGTAAGTGTTCGATCCAGGGGTCAACTGTATCCGTAA
AA sequence Show only first row Show all	>Lus10032119 pacid=23161304 polypeptide=Lus10032119 locus=Lus10032119.g ID=Lus10032119.BGIv1.0 annot-version=v1.0 MPGEDPTHSPPDPAENGGADQNLETMFSPRFKSVAAMAGWDEESILFATLIVEDTPDRDLNLSKRRDPLFKAPPPSSDSKRKRNGQRRNPIPIHVPFLNL DDEEEPPPIQEENIKKKKNEAKVVVTEEEEEKKVYKDGVIGESSCSDAAVIPCLDKLREELSCAICLEICFEPSTTSCGHSFCKKCLRSAADKCGKKCPK CRQLISNGRSCTVNTVLWNTIQLLFPKEVEARKVAEASATVVRNKRANNHEIRKFSRGGVNPSGQRISTWVQNQDPSAVSQRLHEDSALVSSRVQRVEAA ASGRRRSRTSRAGEGQMIPSRDGDSALALRLQRQEFIEGFSRETDQGSAGRGGLSRARANLRAMASRAVSVRSRGQLYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	0	1
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	3.9	0.9446
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	4.0	0.9423
AT5G12360			unknown protein		Lus10038810 [exp]	8.3	0.9356
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	8.7	0.9348
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	11.6	0.9340
AT5G12930			unknown protein		Lus10031827 [exp]	13.4	0.9130
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	13.9	0.9314
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Lus10036576 [exp]	14.0	0.9086
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	14.5	0.9117
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	15.5	0.9088

Compare expression of checked genes

Lus10032119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.