Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34620 270 / 5e-90 Mitochondrial transcription termination factor family protein (.1) AT2G03050 195 / 7e-61 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G36000 139 / 9e-39 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT3G18870 131 / 3e-36 Mitochondrial transcription termination factor family protein (.1) AT1G78930 105 / 5e-25 Mitochondrial transcription termination factor family protein (.1) AT4G14605 100 / 3e-23 Mitochondrial transcription termination factor family protein (.1) AT2G21710 92 / 1e-20 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT5G55580 86 / 1e-18 Mitochondrial transcription termination factor family protein (.1) AT4G38160 74 / 6e-15 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G44020 61 / 3e-10 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014567 [exp] 472 / 1e-168 AT2G34620 300 / 6e-101 Mitochondrial transcription termination factor family protein (.1) Lus10030451 [exp] 162 / 2e-47 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 160 / 4e-47 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10016971 [exp] 151 / 3e-43 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 150 / 5e-43 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10029422 [exp] 142 / 2e-39 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 140 / 5e-39 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10042342 [exp] 129 / 5e-35 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1) Lus10026325 [exp] 128 / 2e-34 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081400 [exp] 288 / 7e-97 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.010G167400 [exp] 157 / 4e-46 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 155 / 2e-44 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 151 / 4e-43 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.004G150600 [exp] 127 / 1e-34 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 116 / 5e-29 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 97 / 3e-22 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 89 / 2e-19 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 86 / 2e-18 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.004G209400 [exp] 74 / 6e-15 AT4G38160 481 / 3e-172 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10032120 pacid=23161121 polypeptide=Lus10032120 locus=Lus10032120.g ID=Lus10032120.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGTTACACTCTGCATTCTCCATTGCAGCATCATCACAAGCTCCTGCAGATCCACACCACCATCAATACACCATTTCTTCAACAAAGCTCT CAGCCAAACCAACAAACAACAACAAAACCAAAACCCTCCACTTGAACAACCCACTCCTCCACAAAAACCTCACCACCCAAATCAAGGAGAAAATCCTCTG CCTCGAAATCATGGGCGTCGACTCCGGCAAGGCCCTCTCCAAAAACCCAGACCTCCACTCCGCTTCCCTCGACTCAATCCACGTTATCATCTCCTTCCTC CACTCAAAAGGCATCCACCACAAGGACTTCCCTCGAATCTTCGGAATGTGCCCTCAGCTCCTCACTTCCGACGTCGCATCACACCTCTCCCCTGTCTTCT ACTTCCTCTCCGACGATCTCAAAGTCCCCGACTACAAATTCCGGAAAATCATCACCAAATGCCCCCGCATTTTGACTTCCGACGTTGACCGCCAACTCAG ACCTAACTCAACCTACCTGAGGGATACGATCGGGTTCCAACAGCGGCAATTGGAAACCCTAATTTACACCGATCCGGTTCTGTTAGTCTCCAGCGTGGAG AATACTCTGGTTCCTAAACTCAAGTACTTGGAGGAAGGGATTGGACTGACGGAGGACGAGATTTTCGGGATGGTGAGGAGGTTTCCGTCGTTGTTGACGT TTAGTGTGGAGAATAATTTGAAGCCTAAGTATGAGTTCTTTGTTGGGGGGATGGAAGGGAGAGGATTGGAGGAGATTAAGGCGTTTCCGCATTATTTTGG GTTTAGTTTGGAGAATCGGATCAAGCCGAGGTACTTGCAGGTTCTGGAGAGAGGGATGATGACGATGCCTCTTCCTCTTCTGCTCAAGACCACTGATCCT CAGTTCCAGCTGCTACTTTCTCAGACCTCCTCTGTATAG
AA sequence Show only first row Show all	>Lus10032120 pacid=23161121 polypeptide=Lus10032120 locus=Lus10032120.g ID=Lus10032120.BGIv1.0 annot-version=v1.0 MSSSLHSAFSIAASSQAPADPHHHQYTISSTKLSAKPTNNNKTKTLHLNNPLLHKNLTTQIKEKILCLEIMGVDSGKALSKNPDLHSASLDSIHVIISFL HSKGIHHKDFPRIFGMCPQLLTSDVASHLSPVFYFLSDDLKVPDYKFRKIITKCPRILTSDVDRQLRPNSTYLRDTIGFQQRQLETLIYTDPVLLVSSVE NTLVPKLKYLEEGIGLTEDEIFGMVRRFPSLLTFSVENNLKPKYEFFVGGMEGRGLEEIKAFPHYFGFSLENRIKPRYLQVLERGMMTMPLPLLLKTTDP QFQLLLSQTSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	0	1
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	1.0	0.9370
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015834 [exp]	2.4	0.9335
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	2.8	0.9157
AT1G18060			unknown protein		Lus10041995 [exp]	3.2	0.9206
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020415 [exp]	3.9	0.9253
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026909 [exp]	4.2	0.8891
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	4.5	0.9246
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	7.9	0.9086
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	8.1	0.9192
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	8.5	0.8780

Compare expression of checked genes

Lus10032120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.