Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27325 1187 / 0 hydrolases, acting on ester bonds (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014564 [exp] 1969 / 0 AT3G27325 1290 / 0.0 hydrolases, acting on ester bonds (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338000 [exp] 1468 / 0 AT3G27325 1367 / 0.0 hydrolases, acting on ester bonds (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10032122 pacid=23161287 polypeptide=Lus10032122 locus=Lus10032122.g ID=Lus10032122.BGIv1.0 annot-version=v1.0 ATGCAAGGATTCAAGGCCAAACTTAGGGTGGCGGTTCCAGTTGTGTTAGCTCTGTCGATTTCTCTTCTTGGTTTGTACGGGCTGTTGAAGCCAATCTCCA ATGGATGTGCTATGACTTACATGTATCCAACTTACATTCCGATTTCGACCACCGTGAATGGTGATGCTGCTGCTACTTCCGGTGGTAAGTATGGGTTGCA CCTTTACCATGAAGGTTGGAAGAAGATCGATTTCGAGGAGCATCTCAAGCAGCTTAGTGGCGTTCCTGTTCTTTTTATCCCTGGAAATGGTGGCAGCTTC AAACAGGCAATGCTTTCCTTTCTCTTCTTATCCTCTCCCTGTCTCACTTGCAGTGATCTCGTAAGGTCTTTGGCTGCTGAATGTGAGAGGGCATACCAAG GAGGTCCGCTAGAAAGGACATTTCTTCATGAGGCAAGTTTAACTCCCGAGGAGGGAGGCATGGACATGCATTCGGCTGACTTTCAATTGCCCGGCCAGTA CAGTAGTAAGATAGATTGGTTTGCAGTGGATCTTGAAGGTGAACATTCTGCCATGGATGGCCAGATACTTGAAGAACACACTGAATATGTTGTGTATGCC ATTCACAAGATTTTGGATCAGTATAAGCATTCTCATGATGTGCGAGAAAAAGAAGGTGCTGCCACTTCTGGTACTGTGCCAAAGAGTGTGATATTAGTTG GTCATTCCATGGGTGGTTTTGTTGCTAGAGCTGCTGTAATCCATCCCCGGCTGAGGAAGTCTGCTGTTGAGACTATTCTTACACTTTCAACCCCACATCA GTTACCTCCAGTGGCTTTGCAGCCATCATTGGGCAACTACTTTACTCGTGTGAACAATGAATGGAGGAAAGGATATGAGGTCCAAACCACTCAAACTGCA CCATTTGTGTCTGATCCATTGCTCTCCCATGTCATTGTTGTTTCAATCTCTGGTGCTTATAACGATTATCAGGTACGAACGAAGTTAGAGACCCTGGATG GAATTGTGCCTCCGACTCATGGATTTATGATTAGCAGTACCGGCATGAGAAATGTGTGGCTATCCATGGAGCATCAGGCTATTCTATGGTGCAACCAATT AGTTGTACAAGTATCACACACACTCCTCAGTTTGATAGATGCAAGAACAGGTCTTCCATTTCCCGATACTCGGAAAAGGCTTTCCATATTAGCAAGGATG CTTCGTAGTGGGATACCTGATGCTCTCCATTGGACAAGTCAGCCACATCTTCATGATCCAAGCAAAAATCTAAGTGCTGAAGCTGTTTCTCAAGTGGCTA CTTTACCTGGTTGCCCCAGCAATCTTGTCTGGAATGATGATGGTCTGGAGAAGGATCTATATATCCAAACTAGTACTATGACTGTCTTGGCCATGGACGG GAGAAGACGATGGTTGGACATACATAAATTGGGCTCAAACAGGAAGAGTCATTTTGTGTTTGTGACTAATCTTGCTCCGTGTTCTGGGGTGAGACTTCAC CTGTGGTCTGAAAAGGGAAAGTCAAATTCAGACAAAATAGTTGAGGTTACATCAAAGCTGGTGCAGATTCCATCAGGACCAGCTCCAGTACAGGCTGAGC CTGGAAGACAGACCGAACAAGCACCTCCTTCTGCTTTACTTTGTCTAACTCCCGAAGATATGCGAGGCTTCAGATTCCTGACGATTTCAATTGCTCCTCG TCCGACTGTTTCAGGCCGACCTCCACCACCAGCTTCTATGGCAGTTGGGCAGTTCTATGATCCGAAGGAGGGAGAAAGAGAGTTATCTGTGCCCGTGATG CTTCTATCTGCCTATTCTTCAAAGGATATGGTGCTGGAAGAGGATCATCCCCTAGCTTTTAATTTATCCTTTGATGTCAGCCTAGGCCTTTTGCCAACTT CACTATCTCTAGAAACTACTGGATGTGGAATAAAGAAGTCTGGGCTTCCTGACGAAGAGTCTGGAGATATGGAAACTACCAATCTTTGCAAATTGCGGTG TTTTCCACCTGTTGCTGTGGCCTGGGATCCCACATCTGGGCTTCATATCTTCCCTAGTTTGTATAGTGAAACTGTTACGGTTGACTCATCACCAGCAAGT TTGAGTTCCTTTCCAGGATCAGAAAAAACTTCTATACTGTTACTGGTTGATCCTCATTGTTCATATAAATTGAACTTTGCTGCTTCTCAAACAGCTGCTG CTGGCAGATTTTTGCTTCTGTATAGCTCGCAGATGGTGGCTTTCTGCTTTGCAGCTATCTTCTTTGCGTTAATGCAGCAAGTGCATGCATGGGATCTAGA TTTGCCTATACCTTCAGTGCTTACGGCCATGGCTTCCAACTTAAGGATGCCTCTACCGTTTATGATTTTGGGCTTCACCCCCATTCTAGTTTCACTATTT CTCTCGATGCTAAATTCACAGCCTCTTCCTTCAATTGCAAGCTTCGTTGCTGTGTCCATAATTTGCTATCTATTCGCAAATGGGGTTGTAATCCTACTGG TACTGGGGTCCCAATCTCTCTTCTATGCAGTTGCGTTCATGCATTTGCTCCTCAAGTCAAGGTGGCAACACTGGGAAGAAAACTTCCAGCTTGTGTATCT TCGCTGGTTTATTACTCTTTCTGCTAGGGTCTTCTCATTTAAGGCCATGAGGGTAATAAGAGCCAGCCCATCTTTGGTCACTGCGTTAACAGCAATTACA TTGGGATGTTTTGTTCACCCATCATTGGGTTTACTCGCCCTCCTCTTAGCTCATGCCCTATGCAGTCACAATGCTTTATGCAGCAGTTTTTTGACAGCTT CGTTTCGCAGCAGCCACACACGAAAGAAGGATTTCCTTGGCTATGAGGACAAAGATAAAGAAAGTTCTTGGCCACCTTCAACAAAGCATGAAATTGGGGT CAACCAGAATCCTGCACTGTTGGAAGAAAATAGCTCCAACAGTCCAAACAGTTCAAAGAGTTTCAGTGACACGCAATTAGAGATCTTCCATCACCGACAT GGGTTGCTGATTCTGCATCTCATGGCAGCTCTTATGTTTGTCCCTTCTTTCGTGGCTTGGGTGCAGAGAATAGGCACAGGTCATAGCTTCCCATGGTTCC TAGATTCAACCATGTGCATCGGCGTCGTTCTCCATGGTGTCTTTTGCTCGAATCCCGACTTCAATTCCTTGCTTTCGTTTGTGATATGGAAGGAAGTTAA ATTGGATTCAATCTATCTTCTCGCCGGTCTCTATTCATATATAGCTGGGTTGGGATTGGCTCCCTATAAGGTCTTCTACCCAATTGCAGTCATAGGGCTC TTATCATTTGCTGTGAAGCTGTTACATCAAAGGAGCAAGGATAATGGAGAGCCATCGCGTCTTGGCCGGAAAAAGCATTCTCATAGACACTGA
AA sequence Show only first row Show all	>Lus10032122 pacid=23161287 polypeptide=Lus10032122 locus=Lus10032122.g ID=Lus10032122.BGIv1.0 annot-version=v1.0 MQGFKAKLRVAVPVVLALSISLLGLYGLLKPISNGCAMTYMYPTYIPISTTVNGDAAATSGGKYGLHLYHEGWKKIDFEEHLKQLSGVPVLFIPGNGGSF KQAMLSFLFLSSPCLTCSDLVRSLAAECERAYQGGPLERTFLHEASLTPEEGGMDMHSADFQLPGQYSSKIDWFAVDLEGEHSAMDGQILEEHTEYVVYA IHKILDQYKHSHDVREKEGAATSGTVPKSVILVGHSMGGFVARAAVIHPRLRKSAVETILTLSTPHQLPPVALQPSLGNYFTRVNNEWRKGYEVQTTQTA PFVSDPLLSHVIVVSISGAYNDYQVRTKLETLDGIVPPTHGFMISSTGMRNVWLSMEHQAILWCNQLVVQVSHTLLSLIDARTGLPFPDTRKRLSILARM LRSGIPDALHWTSQPHLHDPSKNLSAEAVSQVATLPGCPSNLVWNDDGLEKDLYIQTSTMTVLAMDGRRRWLDIHKLGSNRKSHFVFVTNLAPCSGVRLH LWSEKGKSNSDKIVEVTSKLVQIPSGPAPVQAEPGRQTEQAPPSALLCLTPEDMRGFRFLTISIAPRPTVSGRPPPPASMAVGQFYDPKEGERELSVPVM LLSAYSSKDMVLEEDHPLAFNLSFDVSLGLLPTSLSLETTGCGIKKSGLPDEESGDMETTNLCKLRCFPPVAVAWDPTSGLHIFPSLYSETVTVDSSPAS LSSFPGSEKTSILLLVDPHCSYKLNFAASQTAAAGRFLLLYSSQMVAFCFAAIFFALMQQVHAWDLDLPIPSVLTAMASNLRMPLPFMILGFTPILVSLF LSMLNSQPLPSIASFVAVSIICYLFANGVVILLVLGSQSLFYAVAFMHLLLKSRWQHWEENFQLVYLRWFITLSARVFSFKAMRVIRASPSLVTALTAIT LGCFVHPSLGLLALLLAHALCSHNALCSSFLTASFRSSHTRKKDFLGYEDKDKESSWPPSTKHEIGVNQNPALLEENSSNSPNSSKSFSDTQLEIFHHRH GLLILHLMAALMFVPSFVAWVQRIGTGHSFPWFLDSTMCIGVVLHGVFCSNPDFNSLLSFVIWKEVKLDSIYLLAGLYSYIAGLGLAPYKVFYPIAVIGL LSFAVKLLHQRSKDNGEPSRLGRKKHSHRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27325			hydrolases, acting on ester bo...		Lus10032122 [exp]	0	1
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	1.4	0.9705
AT4G00440			Protein of unknown function (D...		Lus10028148 [exp]	1.4	0.9494
AT5G06970			Protein of unknown function (D...		Lus10008663 [exp]	2.0	0.9452
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	4.9	0.9454
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10003407 [exp]	6.5	0.9332
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	9.2	0.8860
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	9.2	0.9439
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10013101 [exp]	9.2	0.9401
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	9.9	0.9270
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	10.8	0.9178

Compare expression of checked genes

Lus10032122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.