Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40490 300 / 3e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 278 / 8e-91 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 201 / 1e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 176 / 3e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 170 / 1e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 169 / 6e-48 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 162 / 7e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 160 / 3e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 154 / 2e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 129 / 9e-34 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014562 [exp] 444 / 4e-155 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043154 [exp] 272 / 2e-88 AT3G13224 361 / 5e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032595 [exp] 269 / 2e-87 AT3G13224 357 / 2e-122 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 170 / 2e-48 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 169 / 1e-47 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032624 [exp] 166 / 5e-47 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10038806 [exp] 168 / 8e-47 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 167 / 1e-46 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 166 / 1e-46 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344900 [exp] 334 / 1e-112 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G370300 [exp] 291 / 3e-96 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.017G064901 [exp] 231 / 4e-75 AT3G13224 216 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 216 / 3e-66 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 213 / 9e-65 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 174 / 7e-50 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 173 / 1e-49 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 173 / 2e-49 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 172 / 3e-49 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G088100 [exp] 165 / 3e-46 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032124 pacid=23161269 polypeptide=Lus10032124 locus=Lus10032124.g ID=Lus10032124.BGIv1.0 annot-version=v1.0 ATGGACCCTCACGTCAACAACGAGGAGCTCCCAGGCGGAGAAGCTGACGGCGGCCGTCAATCCAACAACCACCACAACAACGATGACGACAGGTCTCTTT CTCACACTGGAGATGGAGCCAGTCCCGGAAAGATTTTCATTGGTGGTTTATCAAGAGATACTACGACTGCTGAGTTTATCGAGCATTTTGGTAAATATGG TGAAATTACGGATTCTGTCATTATGAAGGACCGAAAAACCGGTCAACCACGTGGATTTGGGTTCATCACCTATGCAGACCCTTCTGTTGTTGATCAAGTC ATTCAGGACACACATATTATTAAGGATAAACAAGTGGAAATTAAGCGAACTATACCTAGGGGAGCCGCTGGGTCTAAGGATTTCAGGACAAAGAAAATTT TTGTTGGTGGAATTCCTTCAGCAGTCACTGATGATGAGCTGAAAGAATTCTTTGCACAATTTGGAAGTGTTATGGAGCACCAGATCTTGAGGGACCATTC AACTAATCGCTCTCGTGGCTTTGGGTTTGTTACCTTTGAAGAAGAAGATGCAGTTGATGACCTACTTACAAAGGGAAATCGAATTGAATTTGCTGGAACT CAGGTTGAGATCAAGAAGGCAGAACCAAAGAAGCCTAATCCGCCAACACCTTCATTCAAACGTTACAATGATTCAAGGCCACCGTCTCGTGGTGGATTCA ATGATATTTACGACGGGCCAGGAGGGTATACCTATGGCGGCGGTGGTGGCGGCAGCTTATACAGATCAGGTGGTGCTTATGGAAGCAGTAGAATGAGTTC GTATGGTGGATATGGCGCTGGTGAATATGGAGGCGGAGGAGGAGGATATGGAGGATACGGTGGTGGTGCAGGTGGAAGTGGTATAGGGCCTTATAGAGGA GAGCTATCTGTTGGGTATTCAGGACGCTATGGAGGAGGAGGCGGCGGAGGTTATAGCAGAGGGTATGACATGGGTGGAGGTTATGGTGGCCCTGCTGACA GCTATGGTGGCGGATATGGTGGTGCCCCCGGTGGTGGCTACGGAAGCAGCTACGAAACTGGCCTTGGTGGTGGCTATGGTGGTGGCGGTGCTGGTGGCTA TGGAGGCGGTGCTGGTGGTCCCGGTGGAGGTTATGGAAGTAGAGGTGGATACGGTGGGAGTGGTGGATATGGTGGCGGTCCTCCTGCCGGTGCTGGTAGG TATCATCCGTATTCAAGATGA
AA sequence Show only first row Show all	>Lus10032124 pacid=23161269 polypeptide=Lus10032124 locus=Lus10032124.g ID=Lus10032124.BGIv1.0 annot-version=v1.0 MDPHVNNEELPGGEADGGRQSNNHHNNDDDRSLSHTGDGASPGKIFIGGLSRDTTTAEFIEHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDQV IQDTHIIKDKQVEIKRTIPRGAAGSKDFRTKKIFVGGIPSAVTDDELKEFFAQFGSVMEHQILRDHSTNRSRGFGFVTFEEEDAVDDLLTKGNRIEFAGT QVEIKKAEPKKPNPPTPSFKRYNDSRPPSRGGFNDIYDGPGGYTYGGGGGGSLYRSGGAYGSSRMSSYGGYGAGEYGGGGGGYGGYGGGAGGSGIGPYRG ELSVGYSGRYGGGGGGGYSRGYDMGGGYGGPADSYGGGYGGAPGGGYGSSYETGLGGGYGGGGAGGYGGGAGGPGGGYGSRGGYGGSGGYGGGPPAGAGR YHPYSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10032124 [exp]	0	1
AT2G42520			P-loop containing nucleoside t...		Lus10000848 [exp]	1.0	0.8854
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	7.1	0.8655
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	12.2	0.8405
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	19.1	0.8207
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	25.3	0.8299
AT5G02820		BIN5, RHL2	ROOT HAIRLESS 2, BRASSINOSTERO...		Lus10015052 [exp]	27.1	0.8335
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10009602 [exp]	28.5	0.8273
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	44.2	0.8199
AT5G67280		RLK	receptor-like kinase (.1)		Lus10019816 [exp]	46.0	0.7585
AT1G63850			BTB/POZ domain-containing prot...		Lus10017511 [exp]	49.2	0.8099

Compare expression of checked genes

Lus10032124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.