Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19130 768 / 0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014561 [exp] 1350 / 0 AT5G19130 785 / 0.0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345200 [exp] 973 / 0 AT5G19130 791 / 0.0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04114 [flax] [poplar] Gaa1 Gaa1-like, GPI transamidase component
Representative CDS sequence Show only first row Show all	>Lus10032125 pacid=23161202 polypeptide=Lus10032125 locus=Lus10032125.g ID=Lus10032125.BGIv1.0 annot-version=v1.0 ATGACAGACACGGAGAAGGAGGTTGCAGCTGCGACTCCTGAATGGAAGCCGAAGCCGAGACCGATTGTGCGCCTTGGGATCTTCCTTATCTCGCACAGCC TCCTTTTCAGTGTTGTTTGCTGTACGGCTGGAGTTCTAGCGCTCTTTCTGCTTCCTATGCTTGCCAAGACCACTTACATTTCCGAAAATGCGCTCATGCC AGGTTCGGCGAGTAGCATGCTGTCTAATCATGATATTTCGGAAGCGAATCAATTGGCTATGGATTTAACTGGTTTAGATTCAGCTGCTGCGGATGCAGGC ATAGGAAGTAGAAGGGTACTTTCAAAATACTTATCAGACTTGGGAGTTGAAGTCGGTTATCATAAGTTCCAATCTCATCAGAATCAGTTACATCCTCTGC ACTTCTTCTCCAGCCCTGATTCTGGGCTATTGCAAGAGAATGGAAGCTGTTCTTCATATGGCATGAATGTCGTTGGAATAGTAAGGGCACCACAAGGCGA TGGTAAAGAGGCTATTGTGTTGGTGACTCCATACAATTTCGGAAAGAGCGATTCAACTGAAGCTTTATCTGTTAGCATTGGATATGCAGTATTTTCATTG CTCAGTCGAGTTACGTGGCTGGCCAAAGATATTATTTGGCTCGTTGCAGATTCGCAGTATGGAGAACATGCCCCTGTTGCTTCTTGGCTTAAGGACTATC ACATACCCACGTTTTCTAGTTTAGCTGCTCAGAATGCTGGTTCATGTTCTAACGCAAGTATTCTTAATGTAGTAAATGAAGAATCTCTTGGTCTAACAGG GATATCTGCTGGGTTTAGACGTGCTGGGACTATGGCCGCTGCTCTGGTCATAAAAGTCACTGAGGGAAAAGATCAGTTTGAAGACACTCTCGGTGTCTAT GCTGAGGCTTCCAATGGGCAGATGCCAAATCTAGATCTTATCAATATTGTGAATTATTTAGCTGTACACAGACAAGGGTTGCGTGTGAAAGTTCAGAAAT TCCTGTCTCTTCTTGAATGGAAATTGCTTAGGGTGTTGGGAAATACTTTTAACGTCATTGGAAATGTTGCTGGAAGCTTAAATCCAGAATGGAAATTTGG TATTCCTACGACAGATTACATTGAGGGCGCAGCAACGCTTGCAAGTTCCTTATATCACCAGGCACTCGGTATTCCAACAGGTCCACATGGAGCTTTCCGT GATTTTCAGGTTGATGCCATTACTTTGGAGATTTCACCCAAAGTAGTCTATACAAATAAGGGCAGACGTAATGAATTTATTCTGCGAGGTGCAAGGTTGA TTGAAGGGGTTGTGCGTTCAGTTAACAATCTTCTTGAGAAGTTCCATCAATCATTTTTCCTGTACCTCTTAACTGCGCCGGCTAAATTTATCTCGGTTGG AGTGTACATGATTGCTTTTGCTCTCCTCGTGGCACCACTTCCCCTAGTTGCCGCTTCCCTGTATGTTGACGCCAATAAGCTGGAACCTAGTCCCCAAGAC TCCAAAGACAACCAAACTGGTTCTTCTCCCGACAAGCTCTCGATCAACTTCAGACCATGGAAATGGCTCAAAGCAGCCAAAGAAGTATTCGCTGTCCACG CATGGGGTGTCGCTGTTGCACTGCTCCCTTATTTCATCTGCAAAATACCCGATTGCAGTCCAGCAGCCAGCTCTATCATCTGGTTCTCAACCTCAACAGT TGGACTCCTAATCTTATATCTCATCATGGGTTCTCCTCCGAAACCCGAATGGGAAATCTTGAAATCGGTGACAATCTCGGCTGCTTTCATTGGTTTGCTT CTCATGTCTGTTGTCAATTTCGCAACGGCACAAATCGGGGCGTTGCTGCTGGTTCCAGCTTGTTTGCTGGCCCGGCCTTTGATGCCGGACATGAGAAACG CAAGTTTAAGGAGTTTCCTGAGGATCGCCTGCAATGTGGTGTTCTGTCTTGTAGCATTTCCGCCTGCTGCATTTTTTGTCTTGAAGGCTATTATTATGAA TGAAGGCTTGAATAGCATGGAGGTGGGAGACTTTTGGGAGTGGGTTGAGTCTCTTTGGGCATGGAACAGTGCTACCTACATCTACTTAGGTATGGTACAC CTCCCGTGTTGCGTATTATGCTTGCGCATTTTGTCCCACTCTTCTTGA
AA sequence Show only first row Show all	>Lus10032125 pacid=23161202 polypeptide=Lus10032125 locus=Lus10032125.g ID=Lus10032125.BGIv1.0 annot-version=v1.0 MTDTEKEVAAATPEWKPKPRPIVRLGIFLISHSLLFSVVCCTAGVLALFLLPMLAKTTYISENALMPGSASSMLSNHDISEANQLAMDLTGLDSAAADAG IGSRRVLSKYLSDLGVEVGYHKFQSHQNQLHPLHFFSSPDSGLLQENGSCSSYGMNVVGIVRAPQGDGKEAIVLVTPYNFGKSDSTEALSVSIGYAVFSL LSRVTWLAKDIIWLVADSQYGEHAPVASWLKDYHIPTFSSLAAQNAGSCSNASILNVVNEESLGLTGISAGFRRAGTMAAALVIKVTEGKDQFEDTLGVY AEASNGQMPNLDLINIVNYLAVHRQGLRVKVQKFLSLLEWKLLRVLGNTFNVIGNVAGSLNPEWKFGIPTTDYIEGAATLASSLYHQALGIPTGPHGAFR DFQVDAITLEISPKVVYTNKGRRNEFILRGARLIEGVVRSVNNLLEKFHQSFFLYLLTAPAKFISVGVYMIAFALLVAPLPLVAASLYVDANKLEPSPQD SKDNQTGSSPDKLSINFRPWKWLKAAKEVFAVHAWGVAVALLPYFICKIPDCSPAASSIIWFSTSTVGLLILYLIMGSPPKPEWEILKSVTISAAFIGLL LMSVVNFATAQIGALLLVPACLLARPLMPDMRNASLRSFLRIACNVVFCLVAFPPAAFFVLKAIIMNEGLNSMEVGDFWEWVESLWAWNSATYIYLGMVH LPCCVLCLRILSHSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	0	1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	1.4	0.9329
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	3.0	0.9057
AT5G57460			unknown protein		Lus10007798 [exp]	3.2	0.8973
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10029363 [exp]	3.2	0.9091
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	4.2	0.8900
AT4G01400			unknown protein		Lus10002677 [exp]	6.0	0.9047
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	6.2	0.8780
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	8.1	0.8832
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	8.5	0.8839
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	8.5	0.8841

Compare expression of checked genes

Lus10032125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.