Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27640 541 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 87 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 76 / 5e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 75 / 4e-14 transducin family protein / WD-40 repeat family protein (.1) AT1G10580 68 / 6e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 64 / 7e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 65 / 8e-11 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G50230 64 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 64 / 1e-10 transducin family protein / WD-40 repeat family protein (.1.2) AT5G53500 64 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014560 [exp] 894 / 0 AT3G27640 578 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 87 / 3e-18 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 85 / 8e-18 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042325 [exp] 76 / 2e-14 AT4G34460 598 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Lus10022847 [exp] 76 / 3e-14 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10006916 [exp] 72 / 2e-13 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 71 / 2e-13 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001411 [exp] 73 / 3e-13 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001046 [exp] 72 / 3e-13 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345400 [exp] 592 / 0 AT3G27640 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 89 / 2e-19 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 74 / 8e-14 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 71 / 2e-13 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 72 / 3e-13 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.004G153700 [exp] 71 / 7e-13 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.008G172800 [exp] 71 / 1e-12 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G115300 [exp] 69 / 1e-12 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.015G087200 [exp] 69 / 3e-12 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 68 / 5e-12 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032126 pacid=23161257 polypeptide=Lus10032126 locus=Lus10032126.g ID=Lus10032126.BGIv1.0 annot-version=v1.0 ATGGAGGCTTCCAGCTCCACCTCAACGCACAAGTCCGGATCCTTCTTCCAAGATCTCAGGTCAAGGGAACTCAACGGATTCAGAGTTCGGAAGCGGCCGT ATTCTGAGGATTCGCAGCTGCAATTCGACGTGGTCGGAGAGGTAGCAGTTGAGCATAACAACGAGGATACGCCTCCTTTGGCCGTTTCTTTCTGCAAGAC GGCTAAAAATGCTCACATTCTCGCGGTGTCTGATGAGGACGGCTACGTGAGCTTGTTCGATACACGACGGAAGTTGTCCTCTTCTTCTACTCGTCAAGAG AATGCAGAAAAATCGAGAATTATTGAGTGGGTAGCTCATCAGAATGCCATATTTGATGTTCAATGGATTAAGGATGACACCAACATTCTCACAGCTTCAG GAGATCAAACAATACAACTGTGGGATGTAGAACGGAGGAAATGCAAAGGCGTCTTAACGGGGCACGCTGGAAGTGTTAAATCTCTCTGCTCCCATCCAAC AAATTCTGACCTTCTTGTGTCTGGTTCAAGAGATGGTTCGTTTGCATTGTGGGACTTGAGGTGCCAGAACACTTCCACGAGAAGATCTAGTGAAATTTGT ATAAGTTCAACTGCTCTGGTGAAGGGAGCTCATCTTTCAGCCCAAGCAAAACGGACTAGGCGTGGCAAGGCGGCTTCCATGAGCATCACATCAGTTCTTT ATCTTAAAGACGAGATGTCCATTGCGACTGCTGGTGCAGTAGACAGCATTATCAAATTCTGGGATACGCGGAACCTGAAAGCTCAAGTTACTCAAGTGTG CCCTCAACCCAAGTCGTCAACCGAAAAGGTGAAGAGATTGCATGGTATATCTAGTCTATCTCAGGACTCCTATGGAACGTTCCTTACAGCTTCTTGCATG GATAATAGAATTTACTTGTATAATGTTCTTCAGCTTCAAAAGGGTCCCATACAGTCATTCCGTGGATGCCGCATAGAGTCATTCTTTGTAAAGTCTGCAA TTAGTCCCGATGCTTCGTGCATACTCAGCGGGTCCAGCGATGGAAACGCGTACCTATGGCAGGTGGGGAAGCCCCAGATGGATCCTACGATATTGAAAGG CCATGATGGAGAAGTAACAGCAGTAGATTGGTGTCAGTCTGAAGAAGGCAAGATATCAACTTCTGCGGACGATTTCACGGTTCGAGTATGGAACGCTCAA AACTTCTATGGTCCAAGCACGAGATCACCAACTTCGATCCGGAGGAGAGTAATGGCGACCCCGGATCAGGAACAGAGACGGTTGAAGTTGAATCTTGCTA GAAGTGAAGCCGATGGTGATGATTCAGTTTCGTCAGAGAAAGAAGCAATGCCAGCACCACCTGGAACTCCTGAAACTCAAAGGAAAGTTTGGGAGGAAGA GGAAGTTTCAGGAGAGGTGTTTGTGGAGACAACACCTGAATCTGCAGAGAAGAGCCCTTCTTCTGTGTTGAATCCTCCCTCTTCCTTGAAAAGAAAAACC ATTCGTGACTATTTTATTACTGCATAA
AA sequence Show only first row Show all	>Lus10032126 pacid=23161257 polypeptide=Lus10032126 locus=Lus10032126.g ID=Lus10032126.BGIv1.0 annot-version=v1.0 MEASSSTSTHKSGSFFQDLRSRELNGFRVRKRPYSEDSQLQFDVVGEVAVEHNNEDTPPLAVSFCKTAKNAHILAVSDEDGYVSLFDTRRKLSSSSTRQE NAEKSRIIEWVAHQNAIFDVQWIKDDTNILTASGDQTIQLWDVERRKCKGVLTGHAGSVKSLCSHPTNSDLLVSGSRDGSFALWDLRCQNTSTRRSSEIC ISSTALVKGAHLSAQAKRTRRGKAASMSITSVLYLKDEMSIATAGAVDSIIKFWDTRNLKAQVTQVCPQPKSSTEKVKRLHGISSLSQDSYGTFLTASCM DNRIYLYNVLQLQKGPIQSFRGCRIESFFVKSAISPDASCILSGSSDGNAYLWQVGKPQMDPTILKGHDGEVTAVDWCQSEEGKISTSADDFTVRVWNAQ NFYGPSTRSPTSIRRRVMATPDQEQRRLKLNLARSEADGDDSVSSEKEAMPAPPGTPETQRKVWEEEEVSGEVFVETTPESAEKSPSSVLNPPSSLKRKT IRDYFITA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	0	1
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	2.2	0.9288
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10019785 [exp]	2.4	0.9269
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	3.7	0.9405
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	3.9	0.9430
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10040404 [exp]	6.5	0.8966
AT4G02110			transcription coactivators (.1...		Lus10025038 [exp]	6.6	0.9091
AT4G16807			unknown protein		Lus10010996 [exp]	6.9	0.9161
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	8.1	0.9392
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10040794 [exp]	8.8	0.8979
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	9.2	0.8772

Compare expression of checked genes

Lus10032126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.