Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40420 114 / 4e-32 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G01570 100 / 5e-27 Oleosin family protein (.1) AT3G27660 100 / 7e-27 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT5G51210 55 / 6e-10 OLEO3 oleosin3 (.1) AT2G25890 55 / 1e-09 Oleosin family protein (.1) AT4G25140 52 / 1e-08 OLE1, OLEO1 oleosin 1 (.1) AT5G07550 44 / 3e-06 ATGRP19, GRP19 glycine-rich protein 19 (.1.2.3) AT5G61610 45 / 1e-05 Oleosin family protein (.1) AT5G07571 42 / 3e-05 Oleosin family protein (.1) AT5G07560 40 / 0.0002 ATGRP20, GRP20 glycine-rich protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014559 [exp] 211 / 3e-70 AT3G01570 159 / 1e-49 Oleosin family protein (.1) Lus10003742 [exp] 102 / 8e-28 AT3G01570 142 / 1e-43 Oleosin family protein (.1) Lus10028035 [exp] 100 / 8e-27 AT3G01570 139 / 8e-42 Oleosin family protein (.1) Lus10028822 [exp] 73 / 1e-16 AT4G25140 146 / 3e-46 oleosin 1 (.1) Lus10017460 [exp] 73 / 2e-16 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10031387 [exp] 66 / 6e-14 AT4G25140 164 / 1e-52 oleosin 1 (.1) Lus10027161 [exp] 66 / 8e-14 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10010943 [exp] 66 / 1e-12 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039683 [exp] 61 / 5e-12 AT4G25140 159 / 2e-50 oleosin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345800 [exp] 134 / 2e-40 AT3G01570 140 / 6e-43 Oleosin family protein (.1) Potri.017G071800 [exp] 126 / 2e-37 AT3G01570 130 / 4e-39 Oleosin family protein (.1) Potri.012G083400 [exp] 99 / 1e-26 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.015G081901 [exp] 98 / 3e-26 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.T125308 [exp] 98 / 3e-26 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.001G080000 [exp] 56 / 3e-10 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.006G234900 [exp] 56 / 4e-10 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.003G150600 [exp] 53 / 3e-09 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.018G057800 [exp] 50 / 3e-08 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.012G059400 [exp] 38 / 0.001 AT3G18570 113 / 4e-32 Oleosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10032127 pacid=23161052 polypeptide=Lus10032127 locus=Lus10032127.g ID=Lus10032127.BGIv1.0 annot-version=v1.0 ATGGCGGATCGTACAACACAGCCACACCAAGTCCAGGTCCACACCCAGCACCACTATCCCACCGGCGGGGCTTTCGGCCGTTATGAAGGTGGACTCAAAG GCGGTCCACATCACCAGCAAGGATCAGGCAGCGGCCCATCAGCTTCCAAGGTGTTAGCAGTCATGACCGCGCTCCCCATCGGCGGGACCCTCCTTGCCTT GGCCGGGATAACCTTGGCTGGGACGATGATCGGGCTGGCGATCACCACCCCGATTTTTGTCATCTGCAGCCCTGTTCTAGTCCCGGCCGCTCTGCTCATC GGGTTTGCCGTGAGCGCGTTTCTGGCCTCGGGGATGGCCGGGCTGACAGGGCTGACCTCGCTGTCGTGGTTTGCGAGGTATCTGCAGCAGGCTGGGCAGG GAGTTGGAGTGGGGGTGCCGGATAGTTTCGAGCAGGCGAAGAGGCGCATGCAGGATGCTGCTGGGTATATGGGGCAGAAGACCAAGGAAGTTGGGCAGGA GATCCAGAGGAAGTCTCAGGATGTGAAAGCATCAGACAAATAA
AA sequence Show only first row Show all	>Lus10032127 pacid=23161052 polypeptide=Lus10032127 locus=Lus10032127.g ID=Lus10032127.BGIv1.0 annot-version=v1.0 MADRTTQPHQVQVHTQHHYPTGGAFGRYEGGLKGGPHHQQGSGSGPSASKVLAVMTALPIGGTLLALAGITLAGTMIGLAITTPIFVICSPVLVPAALLI GFAVSAFLASGMAGLTGLTSLSWFARYLQQAGQGVGVGVPDSFEQAKRRMQDAAGYMGQKTKEVGQEIQRKSQDVKASDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01570			Oleosin family protein (.1)		Lus10032127 [exp]	0	1
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	11.0	0.6988
					Lus10010972 [exp]	15.7	0.7159
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10014523 [exp]	18.4	0.6869
AT3G13130			unknown protein		Lus10039066 [exp]	25.7	0.6884
AT3G11690			unknown protein		Lus10013608 [exp]	27.3	0.6861
					Lus10039242 [exp]	30.0	0.6484
AT5G47830			unknown protein		Lus10018732 [exp]	33.9	0.6811
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	42.3	0.6713
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10022522 [exp]	44.0	0.6763
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	44.6	0.6760

Compare expression of checked genes

Lus10032127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.