Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14530 261 / 4e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT5G66240 149 / 2e-43 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G02730 51 / 2e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 48 / 2e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G34460 46 / 8e-06 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT2G20330 43 / 0.0001 Transducin/WD40 repeat-like superfamily protein (.1) AT2G47990 42 / 0.0002 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1) AT5G56130 41 / 0.0004 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014558 [exp] 303 / 8e-104 AT5G14530 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021575 [exp] 160 / 1e-47 AT5G66240 540 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10017157 [exp] 160 / 2e-46 AT5G66240 541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10006916 [exp] 54 / 3e-08 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 53 / 4e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 52 / 9e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 45 / 3e-05 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020846 [exp] 44 / 4e-05 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 44 / 6e-05 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345900 [exp] 290 / 2e-98 AT5G14530 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.017G071900 [exp] 285 / 1e-96 AT5G14530 558 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G114600 [exp] 157 / 2e-46 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.002G051900 [exp] 58 / 6e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 56 / 3e-09 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 50 / 2e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G174100 [exp] 44 / 6e-05 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G193500 [exp] 43 / 0.0001 AT2G20330 853 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 43 / 0.0001 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 42 / 0.0002 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032128 pacid=23161295 polypeptide=Lus10032128 locus=Lus10032128.g ID=Lus10032128.BGIv1.0 annot-version=v1.0 ATGGCGGCGACAGAAACGGCGCCGCTTTCGGAGCTAAATGAAGACACTGTGTGGAGCATGGCGGTCGGAGCTGCATTCACCGACTTCGCTGCTAAAGACT ACATTTCACAAGAAACATGGAGCAGACCGCAGTTTCTTTACTCACCATCCAAGTTCTGTAATTTGTTCCTCCAAGTACAATTTCGAGACGACTGGTGGGT AGTCTCCCTCTGCATGTCTCCACTCAATGATAGCTTCATGTCTGGTTCTCTTGATCACAGTGTTAGAATATGGGATCTTCGTGTAAATGCCTGCCAGGAG ATCATACGACTAAGAGGCCGCCCAACAGTTGCGTATGATCAACAAGGGCTTGTCTTTGCCGTGGCAATGGAAGGGGGTGCTATCAAATTGTTCGACTCTC GTTCTTACGACAAGGGTCCTTTCGACACTTTTTTAGTTGGGGGAGACAATGCTAAGGTCTGCGATATAAAATTCAGCAACGATGGGAAATCAATGCTGTT GACAACTACCAGTAACAGCGTATATGTGCTTGATGCATATGCTGGGGAGAAGCGTTGTGGATTTAGCCTGGAACCATCTCCAAACACAACCATCGAGGCA ACTTTTACCCCTGATGGGCAGTATGTAGTATCAGATCCTGCCTGTAAAGAACTCCGCACACCTGGCGGATTCATATCAGCATCCAGTTAG
AA sequence Show only first row Show all	>Lus10032128 pacid=23161295 polypeptide=Lus10032128 locus=Lus10032128.g ID=Lus10032128.BGIv1.0 annot-version=v1.0 MAATETAPLSELNEDTVWSMAVGAAFTDFAAKDYISQETWSRPQFLYSPSKFCNLFLQVQFRDDWWVVSLCMSPLNDSFMSGSLDHSVRIWDLRVNACQE IIRLRGRPTVAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDNAKVCDIKFSNDGKSMLLTTTSNSVYVLDAYAGEKRCGFSLEPSPNTTIEA TFTPDGQYVVSDPACKELRTPGGFISASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14530			Transducin/WD40 repeat-like su...		Lus10032128 [exp]	0	1
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	11.1	0.7558
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	14.6	0.7517
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	16.2	0.7460
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	16.4	0.7332
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	19.0	0.6837
					Lus10017946 [exp]	20.0	0.6816
					Lus10038255 [exp]	23.8	0.7067
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	28.3	0.6255
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	28.6	0.7144
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	28.7	0.7207

Compare expression of checked genes

Lus10032128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.