Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27770 293 / 2e-98 unknown protein AT5G62960 294 / 4e-98 unknown protein AT1G10660 277 / 9e-92 unknown protein AT2G47115 187 / 3e-57 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014556 [exp] 633 / 0 AT5G62960 305 / 3e-102 unknown protein Lus10042109 [exp] 278 / 5e-92 AT5G62960 397 / 1e-138 unknown protein Lus10027692 [exp] 268 / 3e-88 AT5G62960 355 / 2e-122 unknown protein Lus10029133 [exp] 262 / 9e-85 AT1G10660 338 / 5e-115 unknown protein Lus10002386 [exp] 223 / 8e-71 AT5G62960 320 / 5e-109 unknown protein Lus10038056 [exp] 223 / 1e-70 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 221 / 5e-70 AT1G10660 246 / 3e-80 unknown protein Lus10039964 [exp] 200 / 6e-60 AT5G62960 247 / 7e-78 unknown protein Lus10030594 [exp] 179 / 3e-54 AT1G70505 261 / 6e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347400 [exp] 371 / 9e-129 AT3G27770 314 / 9e-107 unknown protein Potri.010G042600 [exp] 312 / 2e-105 AT1G10660 372 / 1e-129 unknown protein Potri.015G078200 [exp] 309 / 3e-104 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 286 / 5e-95 AT5G62960 387 / 1e-134 unknown protein Potri.002G190200 [exp] 232 / 7e-74 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 227 / 5e-72 AT2G47115 340 / 4e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032130 pacid=23161233 polypeptide=Lus10032130 locus=Lus10032130.g ID=Lus10032130.BGIv1.0 annot-version=v1.0 ATGATGATGCAGCTCCTGCAACTACTGAGTGCTGATGATGATACAACCAGATTGAGCTATTGGCTCAACTGGAGGGTGTTGCTATGCGCCACTTGGGTTT TGGTGCCTATGGTTGTGGCAGTGTTTGTTATCCGCAAGTACGAAGGTCAGGATCATTTGGGGGGATCCTCCGGTGGCAAAATTCAGCAAGGGAAATCGCC TTTATCGCACAGTGACGCTGTGTGGAAGCCTTGTTTTAAGCAAATCCATCCCGCTTGGTTGTTAGTTTATCGAATTCTGGCCTTTTGTGTGCTTTTCGCT ACTCTGGTTCTGAAGCTTGACTCCAATGGAGCTCGAATGTATTTCTATTATACTCAGTGGACTTATACTCTGGTTACCATCTATTTTGCGCTTGGATCCC TGCTCTCGGTTTATGGGTGTTACCGGTTTCACAAGTTGCGCCGTCAAAGATCTTATCTCAATCATGAAATAAGAGATTCCGAGCAAGGGTTTAATGCCCC TCTAATAGCTGATGAAACTGCAGATGTTCATGAGATCAGGAAAAGACCAGATGATGGAGAGGAAGTCTATGCTCACCAAGTTCCTACTATGTATTACATA TTTCAGACCATATACCAGATATGTGCTGGATCAGTTATGTACACCGATTGCATTTACTGGTTCATTATATTTCCATTTCTGACCATTCAAGATTACACTC TCAACTTCATTACAGTAGACATGCATTCGGTCAATGCCATCCTGCTCATCGGCGACATGGCTATGAATAGCTTGCCGTTCCCTTGGTTCCGGATATCTTA CTTCATTCTGTGGACTGGTACTTTTGCCCTTTTCCAATGGGCTGTCCATGCCTGTGAAAATATTTGGTGGCCATACCCATTCTTTGATTTGGCTTCACCA TACGCTCCTTTGTGGTATCTGCTAATGGCATCACTGTCGGTAACATGCTATGGGATATACGTGTTGATAGCGAAGGTGAAGCATCAAGTCTTCTCAAAAT GCTTTCCGGGATCTTATCACTGTTTGACATAG
AA sequence Show only first row Show all	>Lus10032130 pacid=23161233 polypeptide=Lus10032130 locus=Lus10032130.g ID=Lus10032130.BGIv1.0 annot-version=v1.0 MMMQLLQLLSADDDTTRLSYWLNWRVLLCATWVLVPMVVAVFVIRKYEGQDHLGGSSGGKIQQGKSPLSHSDAVWKPCFKQIHPAWLLVYRILAFCVLFA TLVLKLDSNGARMYFYYTQWTYTLVTIYFALGSLLSVYGCYRFHKLRRQRSYLNHEIRDSEQGFNAPLIADETADVHEIRKRPDDGEEVYAHQVPTMYYI FQTIYQICAGSVMYTDCIYWFIIFPFLTIQDYTLNFITVDMHSVNAILLIGDMAMNSLPFPWFRISYFILWTGTFALFQWAVHACENIWWPYPFFDLASP YAPLWYLLMASLSVTCYGIYVLIAKVKHQVFSKCFPGSYHCLT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62960			unknown protein		Lus10032130 [exp]	0	1
AT3G07530			unknown protein		Lus10040483 [exp]	4.2	0.8582
AT2G48030			DNAse I-like superfamily prote...		Lus10029630 [exp]	6.9	0.8082
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Lus10009886 [exp]	9.2	0.8413
AT5G22050			Protein kinase superfamily pro...		Lus10013365 [exp]	11.2	0.8080
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	11.7	0.8229
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10001328 [exp]	17.5	0.8380
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	25.1	0.8405
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10006078 [exp]	31.1	0.7732
AT4G31340			myosin heavy chain-related (.1...		Lus10020166 [exp]	32.3	0.7576
					Lus10042098 [exp]	34.9	0.8067

Compare expression of checked genes

Lus10032130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.