Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08740 579 / 0 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G44190 59 / 2e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 58 / 8e-09 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT2G29990 49 / 6e-06 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 46 / 6e-05 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014555 [exp] 787 / 0 AT5G08740 647 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10013339 [exp] 59 / 3e-09 AT3G44190 497 / 6e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10001856 [exp] 58 / 9e-09 AT3G44190 506 / 1e-180 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10040657 [exp] 57 / 2e-08 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10036185 [exp] 57 / 3e-08 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 55 / 1e-07 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 52 / 1e-06 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 49 / 6e-06 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018541 [exp] 45 / 0.0001 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098700 [exp] 621 / 0 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 56 / 2e-08 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.004G036300 [exp] 54 / 1e-07 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 53 / 4e-07 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 49 / 7e-06 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10032131 pacid=23161130 polypeptide=Lus10032131 locus=Lus10032131.g ID=Lus10032131.BGIv1.0 annot-version=v1.0 ATGAAGGCCGTCTCATCTCCGGCGGCAGTGGCTCACTGCGCCGGTATCAGGAGTTCCTCCTCATCGTTCACGCGCTCTCTATCTTCCTCTAATCCTCGTC GCCTTGACAATTCGAATTCCGCGACTAGTCGCATGTCAAGGGAAAAAATGTTCCCATTTTCCTCGGCGCCAACTCCATTCAGGACCTTCGTTTCTGGCTT CAGGAGTTCCTATTTACGGAGAGACTTGCCTGTTCGATTCGTGACTGCAGAGGCACTCGGGAATGTTGCAGCAGATGCTCCCAATCCACCTGTAGAAGAG AAGCCTCCACGGGTCTACACTTGGCCTTACAAGAAGAATCCGAGGGTGTGCATACTAGGTGGTGGATTTGGAGGCTTATATACTGCTTTGAGACTAGAAT CTCTTGTATGGCCAGATGATAAGAAACCTCAGGTGCTTCTTGTTGATCAAGCTGAGCGTTTTGTCTTTAAGCCAATGTTGTATGAGATTCTTACAGGAGG AAAAGTTAAGCCTGCCGGTACAGTGCTTCTACAAAGTGGACTTCTGATAGAGTACGACTGGCTGGTTCTTGCTCTGGGATCTGAAGCTAAACTTGATGTT GTGCCAGGGTCGGCAGAGTTTGCATTACCATTTTCTACTTTGGAAGATGCTCTAGTAAGGGTTCAGAAAGTGGATCATAAGTTGAAAGAACTGGAGAGGA GAAACTTTGCTAAGAAAGCTCCAATAAGTGTATGCATTGTTGGCTGTGGTTATGCTGGAGTGGAGTTGGCTGCCACCGTTTCTGAGAGACTGCAGGACAG GGGGGTTGTACGTGCTATTAATGTGGAAAATATGATCTGCCCAACTGCACCACCTGGGAACAGGGAAGCTGCACTTAAGGTTCTTTCTTCCAGGAAAGTT GAGTTGCTGTTGGGTTACTTTGTCCGCTCTGTAAAGAGAGTAACGGACTCAGACTATGAGAAATATAGTTTGGAACTCCAACCTGCAGAGAGGGGAACAC AAGGTCAAATTATTGAAACGGATTTGGTTTTATGGACTGTGGGGTCTAAGCCCCTGCTTCCTGAGTTGGAACCCAACGAACAGCCGCAAGAACTCCCACT AAATGCTCGTGGCCAAGCCGAGACAGATGAGACCCTCCGTGTCAAGGGTCATCCACGGATATTCGCTCTTGGCGACTCATCTTCTCTTAGGGATTTGAAA GGGAAGCTTCTTCCGCCAACTGCTCAGGTTGCATTTCAGCAAGCGGATTTTACTGGTTGGAACATTTGGGCTGCCATTAATGACCGTCCATTACTGCCAT TTAGGTTCCAAAATCTTGGAGAAATGATGACGCTGGGACAGAACGATGCTGCTGTATCGCCAAGTTTCATCGATGGACTAACCTTAGAAGGTCCTGTCGG CCATGCTGCAAGGAAAATCGCATACCTGATTCGTCTACCAACGGATGAGCATAAGGTTAAAGTAGGGCTGAGTTGGCTGACCAAGTCTGCTATCCAGTCA GTTGCATCAGTTCAGAGCACCCTTGCCAATATCGTTTCAGGATCATAG
AA sequence Show only first row Show all	>Lus10032131 pacid=23161130 polypeptide=Lus10032131 locus=Lus10032131.g ID=Lus10032131.BGIv1.0 annot-version=v1.0 MKAVSSPAAVAHCAGIRSSSSSFTRSLSSSNPRRLDNSNSATSRMSREKMFPFSSAPTPFRTFVSGFRSSYLRRDLPVRFVTAEALGNVAADAPNPPVEE KPPRVYTWPYKKNPRVCILGGGFGGLYTALRLESLVWPDDKKPQVLLVDQAERFVFKPMLYEILTGGKVKPAGTVLLQSGLLIEYDWLVLALGSEAKLDV VPGSAEFALPFSTLEDALVRVQKVDHKLKELERRNFAKKAPISVCIVGCGYAGVELAATVSERLQDRGVVRAINVENMICPTAPPGNREAALKVLSSRKV ELLLGYFVRSVKRVTDSDYEKYSLELQPAERGTQGQIIETDLVLWTVGSKPLLPELEPNEQPQELPLNARGQAETDETLRVKGHPRIFALGDSSSLRDLK GKLLPPTAQVAFQQADFTGWNIWAAINDRPLLPFRFQNLGEMMTLGQNDAAVSPSFIDGLTLEGPVGHAARKIAYLIRLPTDEHKVKVGLSWLTKSAIQS VASVQSTLANIVSGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	0	1
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020484 [exp]	2.2	0.9152
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10029531 [exp]	2.2	0.9028
AT4G04850		ATKEA3, KEA3	K+ efflux antiporter 3, K+ eff...		Lus10020485 [exp]	4.2	0.9097
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	7.3	0.9117
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	7.5	0.9072
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	8.2	0.8681
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10019877 [exp]	12.4	0.8836
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	12.6	0.8849
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	13.0	0.8883
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008040 [exp]	14.1	0.8643

Compare expression of checked genes

Lus10032131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.