Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14600 448 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014554 [exp] 596 / 0 AT5G14600 489 / 8e-176 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032134 [exp] 283 / 3e-96 AT5G14600 211 / 4e-68 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120500 [exp] 461 / 3e-164 AT5G14600 434 / 1e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08704 [flax] [poplar] GCD14 tRNA methyltransferase complex GCD14 subunit
Representative CDS sequence Show only first row Show all	>Lus10032132 pacid=23161051 polypeptide=Lus10032132 locus=Lus10032132.g ID=Lus10032132.BGIv1.0 annot-version=v1.0 ATGTTGCTTGTTGATCCCGAAAAGAAGTTGTCTTTCACGCGGTGCATTAGAGATGGAGATCTGGTCATTGTGTACGAGAAGCACGATGCAATGAAAGCTG TTCAAGTGAGTGAGAGCTCAGTGCTGCAGAACCGTTTCGGCATGTTTAAACATTCGGATTGGATTGGGAAGCCCTTTGGGTCGAAGGTGTTCAGCAACAA GGGAGGATTTGTTCATTTACTAGCTCCAACACCTGAACTGTGGACATTAGTGTTGAGCCACCGAACGCAGATCCTCTATATAGCCGATATTTCCCTTGTT GTCATGTACTTGGAGATAGTTCCTGGATGTTTGGTGCTCGAGTCCGGAACAGGGAGTGGATCTTTGACAACTTCGCTTGCTAGGGCTGTAGCTCCTACTG GACAAGTGTACACATTTGATTTCCATGAACAAAGAGCTGCCTCAGCTAGGGAAGATTTTGAGAAGACAGGAATCAGCAGCTTAGTGACAGTTGGAGTAAG GGACATTCAGGGTCAAGGGTTCCCAGAAGAGCATGCGGGATTAGCCGATGCGGTGTTTCTGGATCTACCGCAGCCGTGGCTAGCTATTCCTTCAGCAGAG AAAATGCTGAAACAAGACGCTGTACTGTGCTCTTTCTCGCCATGCATTGAACAAGTACAACGCAGTTGCGAAACCCTTAGATCAAACTTTACTGATATAA GGACATTTGAGATATTGGTGAGGATGTATGAAGTTCGAGAAGGCAAACTTGAGAGCTTCCAAGGAGGAGATGGAAACATGTCGACGGGCAGTCGTCCGGG GAAGAGGAAGCAGCCTTCGAGTGAAAGAGCCGGTTCACAAGATGATGGTATTACTCTTCCAGTTCTGGCGAAACCCTGTTCTGAGACTAGAGGCCATACT GGCTATCTCACATTTGCTAGACTCAAATGTTCGGCTTGA
AA sequence Show only first row Show all	>Lus10032132 pacid=23161051 polypeptide=Lus10032132 locus=Lus10032132.g ID=Lus10032132.BGIv1.0 annot-version=v1.0 MLLVDPEKKLSFTRCIRDGDLVIVYEKHDAMKAVQVSESSVLQNRFGMFKHSDWIGKPFGSKVFSNKGGFVHLLAPTPELWTLVLSHRTQILYIADISLV VMYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGQVYTFDFHEQRAASAREDFEKTGISSLVTVGVRDIQGQGFPEEHAGLADAVFLDLPQPWLAIPSAE KMLKQDAVLCSFSPCIEQVQRSCETLRSNFTDIRTFEILVRMYEVREGKLESFQGGDGNMSTGSRPGKRKQPSSERAGSQDDGITLPVLAKPCSETRGHT GYLTFARLKCSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032132 [exp]	0	1
AT3G03420			Ku70-binding family protein (....		Lus10014579 [exp]	10.5	0.8824
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	14.3	0.8784
AT1G75590			SAUR-like auxin-responsive pro...		Lus10034507 [exp]	17.9	0.8650
AT2G44050		COS1	coronatine insensitive1 suppre...		Lus10028541 [exp]	20.2	0.8688
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10019702 [exp]	50.3	0.8562
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	51.6	0.8692
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10022198 [exp]	65.7	0.8679
AT5G30495			Fcf2 pre-rRNA processing prote...		Lus10031040 [exp]	68.0	0.8608
AT3G09630			Ribosomal protein L4/L1 family...		Lus10014431 [exp]	80.3	0.8648
					Lus10023559 [exp]	81.1	0.8649

Compare expression of checked genes

Lus10032132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.