Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14610 804 / 0 DEAD box RNA helicase family protein (.1.2) AT3G01540 773 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 624 / 0 DEAD box RNA helicase family protein (.1) AT1G55150 439 / 4e-148 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 438 / 1e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58510 325 / 9e-103 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 325 / 2e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G42520 317 / 3e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 318 / 2e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 315 / 2e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014553 [exp] 976 / 0 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 972 / 0 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 634 / 0 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 612 / 0 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037646 [exp] 451 / 2e-152 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 449 / 6e-152 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 427 / 6e-142 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 425 / 3e-141 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 323 / 3e-102 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347100 [exp] 830 / 0 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 822 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 627 / 0 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.003G038300 [exp] 447 / 3e-151 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 441 / 2e-147 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 429 / 1e-142 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 331 / 3e-100 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 315 / 1e-98 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 318 / 7e-98 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 325 / 1e-97 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10032133 pacid=23161277 polypeptide=Lus10032133 locus=Lus10032133.g ID=Lus10032133.BGIv1.0 annot-version=v1.0 ATGGCTGCTACCGCTGCTCCAAGATTTGCACCAGAGGATCCTACTCTTCCCAAGCCGTGGAGAGGCTTGGTTGATGGTAAAACTGGTTACCTTTACTTTT GGAACCCAGAAACTAATATCACTCAATACGAGAGGCCTACTGCGGTGTCTCTGCCATCCAAGTCATCTACCGTGCCTATCAACTCCTCAGTTCAAGTGGA GCAACCTGCTCATCGTGCCTACAGTCCTGTCAAAGAAGATGATAGGTATGGGAGAAGTAGCAATGGTGGATTAACAAAAACTGACACTGAAACAAGGAGT ATCCAGGATGAAAGAAGTGTCCAAAATGGAACAATTGGTGTAGCTGGGGTAGTTGCGGCTAGAGGACCTGCATATTCTGCTGGAGGAAGCAGTTTATCAG TTGATGCTTACAGGCGCCGGCATGAAATAACTGCAACTGGGGGTGATGTGCCACCACCAATCATGTCTTTTGAAGACACCGGATTTCCTTCTGAGCTACT GAGAGAGGTATACAGTGCTGGTTTCACTGCTCCAACCCCAATTCAGGCCCAATCATGGGCTGTTGTTCTGCAGAGTAGAGATATTGTGGCCGTTGCCAAA ACAGGCTCTGGTAAAACCTTAGGTTACTTGATTCCTGCCTTTCTTCATCTCAAGCGTCTTCGTAATGACCCTAGAATGGGTCCAACTGTGCTGGTATTGT CGCCTACAAGAGAATTGGCTACACAGATTAAAGATGAAGCTTTGAAGTTTGGCAAGTCATCAAGAATTACATGCACGTGTTTATATGGAGGAGCACCAAA GGGTCCTCAACTGGGCCAGCTAGATAGAGGGACTGACATTGTTGTTGCAACTCCTGGTCGTTTAAATGATATTCTCGAGATGAGAAGAGTAAGCCTCAGG CAGATATCATACCTTGTTCTTGACGAGGCTGATAGAATGCTGGATATGGGTTTCGAGCCGCAGATAAGGAAGATTGTGAAGGAGGTGCCTACTCGTCGGC AAACCCTCATGTACACGGCAACTTGGCCAAAGGAGGTCCGGAAAATTGCTTCTGATCTTTTGGTCAATCCTGTTCAAGTTAATATTGGAAATGTTGATGA GCTTGTGGCTAACAAGTCTATCACCCAGTATGTTGAGGTCGTTCCACCTATGGAAAAACACAAACGGCTGGAACAGATACTGCGCTCTCAGGAACCAGGA TCAAAGGTTATAATCTTCTGTTCAACTAAAAAAATGTGCGACATACTTGCTCGTAACCTCAGCCGGTTTGGAGCTGCTGCTATTCATGGAGACAAGTCAC AGAGTGAGAGGGATCAAGTTTTGAATCAGTTTCGGTCTGGGAGGGCTCCTCTGCTAGTAGCTACTGATGTTGCTGCCCGTGGTTTGGATGTGAAGGACAT AATGGCTGTAGTCAACTACGATTTTCCTAATGGTGTGGAGGATTACGTTCATAGGATTGGCAGAACTGGAAGAGCCGGTGCTACTGGTGTAGCTTATACA TTCTTTGGAGAGCAGGATGCCAAACATGCTACAGAGCTCGTTAAACTCTTAGAGGGTGCAAGCCAGAAGGTTCCTCCTGAAATTCGCGACATGGCTTCTC GAGGTGGCGGAATGGGTAGAAGTAGACGATGGGGTAATGGCGACGGAGCAGGTCGTGGTGGTTTCGGTTCCAGTGGTGGCCGTTACGGATCCGGTGGCAG CAATTATGGTTCCAATGGCGGTGGCAGTTTTGGTTCCAGTGGTGGCGGGAGGGGCGGAGGCAGTTGGGGTGGTGGCCGTGGTTATGGCCAAGACAGCAAT GATAGGTATGATAGGGGCGGTGCTAGTGATGGATATGGTGGAGGTGGCGGCGGCGGCTCTAGCTGGAGCGATCGTTTCAAAAGTGAGAAGCGTCATCGCA GCCGCAGCCCTGGGCCAGCGCGAGGAGGTTCCCCTCGCAATTTTCACCGGGCAATGATGGATCGTAGGTGA
AA sequence Show only first row Show all	>Lus10032133 pacid=23161277 polypeptide=Lus10032133 locus=Lus10032133.g ID=Lus10032133.BGIv1.0 annot-version=v1.0 MAATAAPRFAPEDPTLPKPWRGLVDGKTGYLYFWNPETNITQYERPTAVSLPSKSSTVPINSSVQVEQPAHRAYSPVKEDDRYGRSSNGGLTKTDTETRS IQDERSVQNGTIGVAGVVAARGPAYSAGGSSLSVDAYRRRHEITATGGDVPPPIMSFEDTGFPSELLREVYSAGFTAPTPIQAQSWAVVLQSRDIVAVAK TGSGKTLGYLIPAFLHLKRLRNDPRMGPTVLVLSPTRELATQIKDEALKFGKSSRITCTCLYGGAPKGPQLGQLDRGTDIVVATPGRLNDILEMRRVSLR QISYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELVANKSITQYVEVVPPMEKHKRLEQILRSQEPG SKVIIFCSTKKMCDILARNLSRFGAAAIHGDKSQSERDQVLNQFRSGRAPLLVATDVAARGLDVKDIMAVVNYDFPNGVEDYVHRIGRTGRAGATGVAYT FFGEQDAKHATELVKLLEGASQKVPPEIRDMASRGGGMGRSRRWGNGDGAGRGGFGSSGGRYGSGGSNYGSNGGGSFGSSGGGRGGGSWGGGRGYGQDSN DRYDRGGASDGYGGGGGGGSSWSDRFKSEKRHRSRSPGPARGGSPRNFHRAMMDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14610			DEAD box RNA helicase family p...		Lus10032133 [exp]	0	1
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	9.5	0.8789
AT2G06040			unknown protein		Lus10033320 [exp]	10.0	0.8103
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10040964 [exp]	15.9	0.8448
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	17.9	0.8760
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10042933 [exp]	22.3	0.8633
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	23.0	0.8021
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	24.5	0.8577
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	24.8	0.8550
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	25.6	0.8662
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	27.1	0.8721

Compare expression of checked genes

Lus10032133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.