Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14600 191 / 3e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032132 [exp] 291 / 2e-99 AT5G14600 478 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014554 [exp] 289 / 7e-99 AT5G14600 489 / 8e-176 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120500 [exp] 199 / 4e-63 AT5G14600 434 / 1e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08704 [flax] [poplar] GCD14 tRNA methyltransferase complex GCD14 subunit
Representative CDS sequence Show only first row Show all	>Lus10032134 pacid=23161201 polypeptide=Lus10032134 locus=Lus10032134.g ID=Lus10032134.BGIv1.0 annot-version=v1.0 ATGTACTTGGAGATTGTTCCTGGATGTTTAGTGCTCGAGTCCGGAACGGGGAGTGGATCCTGGACAACTTCGCTTGCTAGGGCTGTAGCTCCGACTGGAC AAGTGTACACATTTGATTACCATGAACAAAGAGCTGCCTCAGCTAGGGAAGATTTTGAGAAGACAGGAATCAGCAGCTTAGTGACAGTCGGAGTGAGGGA CATTCAGGGACAAGGGTTCCCAGAAGAGCATGCGGGATTAGCCGATGCGGTGTTTCTGGATCTACCGCAGCCGTGGCTAGCTATTCCTTCAGCAGAGAAA ATGCTGAAACAAGACGCTATTGCTAAAACGTGCCTTGGTTGTGTTGGAAGATATAAGGACATTTCAGATATTGGCGAGGATGTAATGTATGAAGTTCGAG AAGGCAAAGTGGAGAGCTTCCAAGGAGGAGATGGAAACATGTCGATGGGCAGTCGTCCGGGGAAGAGGAAGCAGCCTTCGAGTGAAAGAGCCGGTTCGCA AGACGATAGTAGTACTCTTCCAGTTCTGGCGAAACCCTGTTCTGAGACCAACTGTGAAAGAAATTTCATAGCAACGACGGACTATTATTCAATCTTAGAG CAGCGCCGCCGACATAAACAGTGA
AA sequence Show only first row Show all	>Lus10032134 pacid=23161201 polypeptide=Lus10032134 locus=Lus10032134.g ID=Lus10032134.BGIv1.0 annot-version=v1.0 MYLEIVPGCLVLESGTGSGSWTTSLARAVAPTGQVYTFDYHEQRAASAREDFEKTGISSLVTVGVRDIQGQGFPEEHAGLADAVFLDLPQPWLAIPSAEK MLKQDAIAKTCLGCVGRYKDISDIGEDVMYEVREGKVESFQGGDGNMSMGSRPGKRKQPSSERAGSQDDSSTLPVLAKPCSETNCERNFIATTDYYSILE QRRRHKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032134 [exp]	0	1
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031801 [exp]	4.1	0.7230
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	22.5	0.7472
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031225 [exp]	40.0	0.7410
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	70.6	0.7140
AT1G36280			L-Aspartase-like family protei...		Lus10040229 [exp]	113.8	0.7057
AT1G16830			Pentatricopeptide repeat (PPR)...		Lus10015181 [exp]	117.8	0.7001
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10001588 [exp]	126.9	0.6469
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	131.9	0.6707
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10040869 [exp]	146.4	0.6862
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10025013 [exp]	162.7	0.6822

Compare expression of checked genes

Lus10032134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.