Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14610 779 / 0 DEAD box RNA helicase family protein (.1.2) AT3G01540 761 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 619 / 0 DEAD box RNA helicase family protein (.1) AT1G55150 441 / 4e-149 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 441 / 1e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58510 322 / 3e-101 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 322 / 2e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 320 / 4e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G31970 312 / 1e-98 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT2G42520 313 / 9e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032133 [exp] 971 / 0 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10014553 [exp] 951 / 0 AT5G14610 833 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 627 / 0 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 604 / 0 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037646 [exp] 448 / 1e-151 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 447 / 3e-151 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 432 / 8e-144 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 430 / 4e-143 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 317 / 5e-100 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347100 [exp] 823 / 0 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 818 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 618 / 0 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.003G038300 [exp] 447 / 4e-151 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 437 / 8e-146 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 424 / 8e-141 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 327 / 8e-99 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 319 / 3e-98 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 322 / 1e-96 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G217800 [exp] 308 / 5e-96 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10032135 pacid=23161250 polypeptide=Lus10032135 locus=Lus10032135.g ID=Lus10032135.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCCGCTGCTCCAAGATTTGCACCAGAGGATCCTACTCTTCCCAAGCCATGGAGAGGCTTGGTTGATGGTAAAACTGGTTACCTTTACTTTT GGAACCCAGAAACCAATATCACTCAATATGAGAGGCCTACTGCGCCGTCTCTGCCATCCAAGTCATCTCCCGTGCCTATCAACTCCTCAGTTCAAGTGGA GCAGCCTGCTCGTCGTGCCTACAGTCCTGTCAAAGAAGATGATAGGTATGGGAGAAGTAGCAATGGTGGATCAACAAAAACTGACACTGAAACAAGGAGT ATCCAGGATGAAAGAAGTGTTCAAAATGGAACAATTGGTGTAGCTGGGGTAGTTGCGGCTAGAGGACCTGGATCTTCAGCTGGAGGAAGCAGTTTATCAG CTGAGGCTTACAGGCGCCGGCATGAAATAACCGTAACTGGGGGTGATGTGCCACCACCACTCATGTCTTTTGAAGACACCGGATTTCCTTCTGAGCTACT GAGAGAGGTATACAGTGCTGGTTTCACTGCTCCAACCCCAATTCAGGCTCAGTCATGGGCTGTTGTTCTGCAGAGTAGAGATATAGTGGCCGTTGCCAAA ACAGGCTCTGGTAAAACCTTAGGTTACTTGATCCCTGCCCTACTTCATCTTAAGCGTCTTCGTAATGACCCTAGAATGGGTCCAACTGTGCTGGTATTGT CGCCTACAAGAGAATTGGCTACGCAGATTCAAGATGAAGCTTCGAAGTTTGGCAAATCATCAAGAATTACATGCACGTGTTTATATGGAGGAGCACCAAA GGGTCCTCAACTGGGCCAGCTAGATAGAGGGACTGACATTGTTGTTGCAACTCCTGGTCGTTTAAATGATATTCTCGAGATGAGAAGAGTAAGCCTTGGG CAGATATCATACCTTGTTCTTGACGAGGCTGATAGAATGCTGGATATGGGTTTCGAGCCGCAGATAAGGAAGATTGTGAAGGAGGTGCCTACTCGTCGGC AAACCCTCATGTATACGGCAACTTGGCCAAAGGAGGTCCGGAAAATTGCTTCTGATCTTTTGGTCAATCCTGTTCAAGTTAATATTGGAAATGTTGATGA GCTTGTGGCTAACAAGTCTATCACCCAGTATGTTGAGGTCGTTCCACCTATGGAGAAACACAAACGGCTGGAACAGATACTGCGCTCTCAGGAACCAGGA TCAAAGGTTATAATCTTCTGTTCAACCAAAAAAATGTGTGACATACTTGCTCGTAACCTCAGCCGGTTTGGAGCTGCTGCTATTCATGGAGACAAGTCAC AGAGTGAGAGGGATCATGTTCTGAGTCAGTTTCGGTCTGGGAGGGCTCCTCTGCTAGTAGCTACTGATGTTGCTGCCCGTGGTTTGGATGTAAAGGACAT AAGGGCCGTAGTCAACTACGACTTTCCTACTGGTGTGGAGGATTACGTTCATAGGATTGGCAGAACTGGAAGAGCCGGTGCCACTGGTGTAGCTTATACA TTCTTTGGAGAGCAGGATGCCAAACATGCTACAGAACTCGTTAAACTCTTAGAGGGTGCAAGCCAGAAGGTTCCTCCTGAAATTCGCGACATGGCTTCTC GAGGTGGTGGAATGGGTAGAAGTAGACGATGGGGCAATGGCGACGGTGCAGGTCGTGGTGGTTTCGGTTCCAGTGGTGGCAGTTACGGTTCCAATGGTGG CGGCAGTTTCGGTTCCAGTGGTGGCGGAAGGGGCGTAGGCAGTTGGGGTGGTGGCCGTGGCTATGGCCAAGACAGCAATGATAGGTATGATCGGGGTGGT GCTAGTGATGGATATGGTGGAGGTGGCGGCGGAGGGTCTAGCTGGAGCGATCGTTTCAAAAGCGAGAAGCGTGATCGCAGCCGCAGCCCTGGGCCAGCTC GAGGAGGAGGAGGTTCCCCTCCTCGCAGTTTTCACCGGGCAATGATGGATCGTAGGTGA
AA sequence Show only first row Show all	>Lus10032135 pacid=23161250 polypeptide=Lus10032135 locus=Lus10032135.g ID=Lus10032135.BGIv1.0 annot-version=v1.0 MAAAAAPRFAPEDPTLPKPWRGLVDGKTGYLYFWNPETNITQYERPTAPSLPSKSSPVPINSSVQVEQPARRAYSPVKEDDRYGRSSNGGSTKTDTETRS IQDERSVQNGTIGVAGVVAARGPGSSAGGSSLSAEAYRRRHEITVTGGDVPPPLMSFEDTGFPSELLREVYSAGFTAPTPIQAQSWAVVLQSRDIVAVAK TGSGKTLGYLIPALLHLKRLRNDPRMGPTVLVLSPTRELATQIQDEASKFGKSSRITCTCLYGGAPKGPQLGQLDRGTDIVVATPGRLNDILEMRRVSLG QISYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELVANKSITQYVEVVPPMEKHKRLEQILRSQEPG SKVIIFCSTKKMCDILARNLSRFGAAAIHGDKSQSERDHVLSQFRSGRAPLLVATDVAARGLDVKDIRAVVNYDFPTGVEDYVHRIGRTGRAGATGVAYT FFGEQDAKHATELVKLLEGASQKVPPEIRDMASRGGGMGRSRRWGNGDGAGRGGFGSSGGSYGSNGGGSFGSSGGGRGVGSWGGGRGYGQDSNDRYDRGG ASDGYGGGGGGGSSWSDRFKSEKRDRSRSPGPARGGGGSPPRSFHRAMMDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	0	1
AT5G08780			winged-helix DNA-binding trans...		Lus10002941 [exp]	2.0	0.8894
AT2G35790			unknown protein		Lus10040379 [exp]	3.0	0.8930
AT5G14610			DEAD box RNA helicase family p...		Lus10001272 [exp]	8.0	0.8646
AT5G48240			unknown protein		Lus10041095 [exp]	15.5	0.8728
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	20.0	0.8674
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	20.3	0.8774
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	21.2	0.8756
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10018357 [exp]	23.5	0.8502
AT4G10070			KH domain-containing protein (...		Lus10002947 [exp]	23.6	0.8613
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	25.1	0.8481

Compare expression of checked genes

Lus10032135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.