Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14620 570 / 0 DMT7, DRM2 domains rearranged methyltransferase 2 (.1) AT5G15380 566 / 0 DRM1 domains rearranged methylase 1 (.1) AT3G17310 252 / 5e-75 DRM3, AtDRM3 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014552 [exp] 1092 / 0 AT5G14620 581 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10032652 [exp] 275 / 3e-83 AT3G17310 479 / 5e-160 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10043099 [exp] 56 / 4e-08 AT3G17310 148 / 9e-39 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347000 [exp] 688 / 0 AT5G15380 619 / 0.0 domains rearranged methylase 1 (.1) Potri.010G152200 [exp] 278 / 2e-84 AT3G17310 528 / 3e-179 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Lus10032136 pacid=23161175 polypeptide=Lus10032136 locus=Lus10032136.g ID=Lus10032136.BGIv1.0 annot-version=v1.0 ATGTCGCAAGACGGTGACGATTTTACATGGGACAGTGATATTGATCGGCAGATTGACGAGTACGGTGAAACTGCCACCAGTTCAACGCTAATTGATAGAG CAGGACAGGGTGTCCCTTTGGTAGGTTCGTCCGGGACGAAAGTGATTGATCAGTTCATTGAAATGGGCTTCTCGGAGAAAGAAGTTGCTGAAGCAATTCG AGAGACAGGAGAGGAGAATGCTGATTCGATACTTTCAACTCTTCTCACGCTCAGGGCCATTCAAAATGATGCTCCGGAACAACCGGATGTTGGTTGTTCT GATCGTCTTTCAGACTTTGACGAAAGCTTTTTTGATGAGTTTTCAGATATAGAGGATGCTGGGAGCGAGGTAAATGTAAAAGTTGAGGCTGATGATGATG ACATGTTAGCTTCCCTTGTATCTATGGGATACACAACACCTGAAGTAGCAATAGCTATGGAGAGATGTGGACCAGATGCTACAGCTTCAGAGCTTACAGA TTTCATTTCTGCTGCTCAGATGGCAAAGGAAGCAGATGCTTTGTACCCAGTAGAGGAGAGAAAGCCAAGACCGTTGGCTTCTGAACTCAACAGGAGGAAT TCAAACGGCGGTGTGCCGGCAAAGAAAAGGCCGAGGATGGATGGGTTGGAAGACGATGACATCATTCGGCTTCCGGTTCCGATGATCGGGTTCGGTACCC CGACAAGTCATCAAGTAACATCTAGGCGGCTTCCCGAAGCAGCCATCGGATCGCCCTACTTCTACTATGAGAACGTGGCACTAGCACCCAAAGGAGTGTG GCAGGTAATATCTCGGTTCTTGTATGAGGTTGAACCGGAGTTCGTCGACTCCAAGTATTTCTGTGCGGCTGCAAGGAAAAGAGGGTATGTCCACAATCTG CCTATTGAAGGAAGATACCCACTTCTGCCACTTCCTGCACAAACCATCCACGAAGCTTTGCCCATGACAAAGAAGTTTTGGCCCAAATGGGATACCCGGG ACAAGCTCAACTGCTTACAAACTGCAATGGCGAGTGCAAAGTTGACGGAGAGGATCCGTAAGGCCGTGGAGATATATGATGACGATTCACCTCCACCATC GGATGTTCAGAAGTATGTGATGCATGAGTGTAAGAAGTGGAACTTAGTCTGGGTAGGAAAGAACAAAGTAGCACCACTGGAACCGGACGAAGTCGAGATG CTTTTGGGGTTCCCAAAGAACCACACTAGAGGAGGAGGAATCAGCAGGACTGATAGGTACAAGTCTCTCGGCAACTCGTTTCAGGTGGACACAGTTGCCT ATCACTTGTCGGTGCTGAAGGCCAAGTTCCCAAACGGCATGAACGTGCTGTCCCTCTTCTCTGGAATCGGCGGAGCCGAAGTTGCGTTGTACAAGCTTGG GATTCGCATGAAGAATGTCGTTTCAGTGGAGAGCTCGCAGGTGAACAGAGACATGCTGAAGTCTTGGTGGGACCAAACCAACCAGAGAGGAAACTTGATT GAGATACCCGACGTTCAACAAGTAACAGGTGAGAAACTGGAGGAGCTGATGTCGCTAGTTGGCGGATTCGATCTAGTAATAGGTGGTAGCCCGTGCAACA ACTTGGCCGGCAGCAACCGACATCACCGAAATGGCCTCGAAGGGGAGCATTCTTCCCTGTTTTTTGACTATCATAGGATTCTGGAGGTGGTAAAAGGTTC GGCTGGTAGGTATATGCAGTAG
AA sequence Show only first row Show all	>Lus10032136 pacid=23161175 polypeptide=Lus10032136 locus=Lus10032136.g ID=Lus10032136.BGIv1.0 annot-version=v1.0 MSQDGDDFTWDSDIDRQIDEYGETATSSTLIDRAGQGVPLVGSSGTKVIDQFIEMGFSEKEVAEAIRETGEENADSILSTLLTLRAIQNDAPEQPDVGCS DRLSDFDESFFDEFSDIEDAGSEVNVKVEADDDDMLASLVSMGYTTPEVAIAMERCGPDATASELTDFISAAQMAKEADALYPVEERKPRPLASELNRRN SNGGVPAKKRPRMDGLEDDDIIRLPVPMIGFGTPTSHQVTSRRLPEAAIGSPYFYYENVALAPKGVWQVISRFLYEVEPEFVDSKYFCAAARKRGYVHNL PIEGRYPLLPLPAQTIHEALPMTKKFWPKWDTRDKLNCLQTAMASAKLTERIRKAVEIYDDDSPPPSDVQKYVMHECKKWNLVWVGKNKVAPLEPDEVEM LLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKAKFPNGMNVLSLFSGIGGAEVALYKLGIRMKNVVSVESSQVNRDMLKSWWDQTNQRGNLI EIPDVQQVTGEKLEELMSLVGGFDLVIGGSPCNNLAGSNRHHRNGLEGEHSSLFFDYHRILEVVKGSAGRYMQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	0	1
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	3.7	0.8479
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10016423 [exp]	11.5	0.8190
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034620 [exp]	11.9	0.8494
AT5G11350			DNAse I-like superfamily prote...		Lus10013119 [exp]	18.7	0.8329
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	20.2	0.8453
AT1G50660			unknown protein		Lus10040076 [exp]	21.2	0.8156
AT2G47850	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10035248 [exp]	21.6	0.7839
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	25.6	0.8129
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	26.9	0.8225
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10014507 [exp]	27.3	0.7734

Compare expression of checked genes

Lus10032136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.