Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27730 1293 / 0 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) AT2G42270 261 / 1e-70 U5 small nuclear ribonucleoprotein helicase (.1) AT1G20960 260 / 2e-70 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT5G61140 249 / 5e-67 U5 small nuclear ribonucleoprotein helicase (.1.2) AT4G32700 119 / 8e-27 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT2G06990 82 / 1e-15 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 70 / 1e-11 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 63 / 1e-09 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT1G59760 58 / 6e-08 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014551 [exp] 2086 / 0 AT3G27730 1354 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Lus10025168 [exp] 251 / 1e-67 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10016048 [exp] 251 / 2e-67 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10040524 [exp] 241 / 2e-64 AT5G61140 3299 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Lus10042628 [exp] 226 / 6e-62 AT1G20960 921 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10022115 [exp] 118 / 3e-26 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10027599 [exp] 90 / 8e-18 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10022082 [exp] 83 / 8e-16 AT1G20960 379 / 2e-114 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10013294 [exp] 82 / 2e-15 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348200 [exp] 1440 / 0 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1) Potri.015G056501 [exp] 254 / 2e-68 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.015G095500 [exp] 249 / 9e-67 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.012G097300 [exp] 245 / 1e-65 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.018G036600 [exp] 119 / 1e-26 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.006G078000 [exp] 86 / 2e-16 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 83 / 6e-16 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 60 / 9e-09 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 59 / 3e-08 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.009G041200 [exp] 56 / 2e-07 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] PF02889 [flax] [poplar] Sec63 Sec63 Brl domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10032137 pacid=23161261 polypeptide=Lus10032137 locus=Lus10032137.g ID=Lus10032137.BGIv1.0 annot-version=v1.0 ATGGTCATCTCTGCACCGACTGGTAGTGGTAAAACAGTGCTCTTTGAACTATGTATACTGAGGCTTCTCTCGAGGTTCATCTCTGACCAAACTTTTGTCC ATCTTAAGGGAACCCTCAAAACAGTCTATATTGTACCATCAAAGGCTCTTGTTCAGGAAAAGCACCGTGATTGGACTCAGAAGTTTGGAACAGTGGGAGC AACTTGCTTGGAGTTGACAGGCGATAATGAATTTTATGATACAAGGTCTATAAATGAAGCAGATATTATCCTTACCACTCCAGAGAAATTTGATGCTGTG ACTCGATACCGCATAAAGAATGGAGGATTAAGCTTTTTCAGTGACATAGCTCTTCTACTTATTGATGAGGCTCACCTATTGAATGATCCTCGTGGAGCAG CGTTGGAGGCAATTGTTAGTAGAATTAAAATGCTTGCTACAAATCCTGAACTGAAATCAAGTCCTCTGTCTTCTATCCGTCTGTTAGCTGTTTCCGCCAC AGTTCCTAATATTTGTGACCTTGCTGAATGGCTTAATGTTCCTGTTAAAAGAATCAAAAGATTTGGAGAAGAGATAAGACCTGTGAAGCTGACAACCAAA GTTTTTGGATACACCGCAGCAAAGAATGATTTTCTCTTTGAAAAGGCAAATATTCTGATGCAATTTTCTAGAGGGAAGTCTGCACTAGTCTTCTGTTCTA CTAGAAAGGGAGCACAGGAAACAGCACAGCAACTGTCTCAAACAGTGATGAAATTTGGTTATTCTAATACATTCATTAAAGACCATGAACAGCAGGAAAG ACTTAGGGAAGCTTCCATGACATGCAGTGACAAACAAATGCAATCTTATATACTCTATGGAATTGGTTATCACAATGGGGGCCTTTGCATGAAGGATCGC AATCTCGTTGAAAATCTGTTTCTTAAGGGTGATGTTCCGATTCTGTGCACAACAAATACCCTTGCTCATGGAGTCAACTTACCAGCACATACAGTCATCA TAAAGTCAACACAGCATTATCGCAAAGAAAGAGGTCTCTATATGGAGTATGATCGATCAACGATACTGCAAATGTGTGGAAGAGCAGGTCGGCCACCATT TGATGACACGGGGATGGTGTTAATCATGACAAAAAGAGAAACTCTATTGGATGGACTTTCATGTAGGTCCATTTGTATGAAAATCTCGAGTGGATGTGAA ATGGTGGAATCACAGTTGATGTCATGTGTGACAGAGCATCTAACAGCTGAGATAGTTCAGCTGACGGTTTCTGATATTGCATGCGCAATTGAGTGGTTGA AATGCTCCTACCTGTATGTTAGGATGAAAATTGTAGAAAATTATCCTGTTAGTAAGGGGATAAATAGAGAATCTATTGAGAAGCATGTAAAAGATATCTA CATCCGCAAAGTTCAGGAGTTGTCACGCTATCAAATGATCTTGACAGATGATGACGGTTTCCTTCTAAAACCACTAGAACCTGGGAGGCTAATGACCAAG TACTACTTGAAATTCGACACGATGAAGCACATTATGTTGACTCCGGAAAATTGCAGCTTGGAAGATGCATTGAAAGTCATATGCCATGCTGAGGAAATTT CTTGTATGTATACTGGCAGTATCCTAGTTCCGCTAGCAGGTTTAGCCGTACTTACAAAATATTTGGTTTCTGGCCATGAAGGGATACAACTCAGGCGGAA CGAGAAGAAAATTCTAAATGATATCAATGCTGATAAAGGTGGACGGCTTCGATTCCCCGTGAATGATGAAAAAGGGAAAAGAAAAAAACGTATTCAATCC AAAGAAGAGAAGATATTCATTTTGGCAAATGACTGCTTGTCTGGAGATCCCTCAATCCGAGATATGTCCCTTTCTCACGATATGAATTCTGTCTGCACCA ACGGTTGTAGAATTGCTAAGTGCATGAAAGAGTACTTCTTGTTTAAGAGAAATTATAAAGGAGCGGTGCATTCTATCCTTCTGGCCAAATCATTATATCA GAAACTTTGGGATGACAGCCCATACTTACTCAAGCAATTACCTGGCATTGGAATGGTCACTGCCAAGGCTCTTGATTCCATGGGAGTTAAATCATTCAAT GCACTTGCTGAAGCTGACCCGAGGAGAATAGAGATTATCACGGGCCGGAAATTCCCATTTGGGAATCATATCAAGGATTCATTACTGTCATTGCCTCCCA AGGTCGATATCAGTATTGAAGAAATTGACTGTCAGAGGCAAGGGAAGACTAGAATAAAAGTAACATTGACTAGGCTGTCACAGTCTTCAATATCGTCTAA GCGACATTATGCTGACATGATTGTTGGTGTAGAGGAGGAGAACCTCATCAACTTTCATGAGAAAATAAGAATCCACACTTGTGGTCATCCATGGATTCTG TTCTTTCCTGTTCGCAAACTATCTATTGTTTCTCACGGTCCTGTCTTCCTTCTTGCTCTTGATGCAACATTCTGCTTGGTTTGCTGTAGCAGAGTCGATG AATTCTCCAGCCCTTACAGTGCCACAATCCTCGTGTCAGTCGACCAACAGCAGAAGTTGACCATCAAGGCTGATTTTATGTTTGAAGAATACCTTGGTCT TGATTCACACCAGAAACTTATTCTGACGAAAGAAACCAAGTCGGACAAGAATAACAGACACGGGTGGAAACAACCTTCTTACGTTCCTCCATCTGAGAAA GTCTGTATCATTCAAGATGACGATGAAATCATGTCCAATGGTGCAACTGAAGACAGTTCACTACCCAGTTTCAGGCTCATAGATAATGACTTTGAAGAAG TAGCTACAGTAGAAGGCGGACCTGCAGTTGTGGAAGCCCAGACTGACATGGGGAACAACAACTACGACTTATCAGAACGAACAATATTTGATCACATACG TGAAAAGGCTAAGAACTTCCCTTTCCTCAACACCTCCAACAGTATCTCTGCTGTATCCTCAGAAGCCTTCAGTTTTCCAAGTGAAGTAGGCTCGAACTGT AATCAACCTGACCAGAAACGAATGCTGGAAGCTGGAGATGATGGTATCATCGATCTGACAGTGGATCGGAGCTGGATTGAACAAGACGAAGAGGTTCTCA ACAGCCATGGTTCCACCAATGAAGGACATTTCATACATCTCCTGGATGACGAAGGTGGGTGTCCTTCATCAAGACCTGAGAAAGCTCTAACCGGAGAAGC AATATTCGATCACATAAGGAGGAAAGCCGAGGAGTATCCAACTATACCTACAACTACAAGTTTTCAGCTCTGGGGAAATAATAATAACCCTTCTCCACCG CAACCTCTGCCGGAACCCTCATCAGTCCCTCCTCCGACCCGTTTACAGGGTGGTCAAATCTTTTCCCCAGATATGAATCCAAAGGTGAAACGAGAGGCTG CATGCTGTCCAAGTACTCCTGCCGGAACATTAACTGCTTTGAGTTGGGGTAGACAGAAGACTTCACCGGTCTCTAAAGTTACAGCTGGTCCTGTAGAAAT GTTATCGTTCGACATTTCGATGATGAAGGATAGTACTGCTACTACTGATAGCAGCAGGAGGGGGAAGGAGAAGGACGGGAGGGACGTGTTCCCGCCAAGT GCTAATGGATCAAAACGGCAGCGTTGCTTAGTCGCGGTGCCGGAGCAGACGAGAGAAGCAGATTCGTTCATGGGGTTCCAGAGTGTGTTCTCATTCCTTT GA
AA sequence Show only first row Show all	>Lus10032137 pacid=23161261 polypeptide=Lus10032137 locus=Lus10032137.g ID=Lus10032137.BGIv1.0 annot-version=v1.0 MVISAPTGSGKTVLFELCILRLLSRFISDQTFVHLKGTLKTVYIVPSKALVQEKHRDWTQKFGTVGATCLELTGDNEFYDTRSINEADIILTTPEKFDAV TRYRIKNGGLSFFSDIALLLIDEAHLLNDPRGAALEAIVSRIKMLATNPELKSSPLSSIRLLAVSATVPNICDLAEWLNVPVKRIKRFGEEIRPVKLTTK VFGYTAAKNDFLFEKANILMQFSRGKSALVFCSTRKGAQETAQQLSQTVMKFGYSNTFIKDHEQQERLREASMTCSDKQMQSYILYGIGYHNGGLCMKDR NLVENLFLKGDVPILCTTNTLAHGVNLPAHTVIIKSTQHYRKERGLYMEYDRSTILQMCGRAGRPPFDDTGMVLIMTKRETLLDGLSCRSICMKISSGCE MVESQLMSCVTEHLTAEIVQLTVSDIACAIEWLKCSYLYVRMKIVENYPVSKGINRESIEKHVKDIYIRKVQELSRYQMILTDDDGFLLKPLEPGRLMTK YYLKFDTMKHIMLTPENCSLEDALKVICHAEEISCMYTGSILVPLAGLAVLTKYLVSGHEGIQLRRNEKKILNDINADKGGRLRFPVNDEKGKRKKRIQS KEEKIFILANDCLSGDPSIRDMSLSHDMNSVCTNGCRIAKCMKEYFLFKRNYKGAVHSILLAKSLYQKLWDDSPYLLKQLPGIGMVTAKALDSMGVKSFN ALAEADPRRIEIITGRKFPFGNHIKDSLLSLPPKVDISIEEIDCQRQGKTRIKVTLTRLSQSSISSKRHYADMIVGVEEENLINFHEKIRIHTCGHPWIL FFPVRKLSIVSHGPVFLLALDATFCLVCCSRVDEFSSPYSATILVSVDQQQKLTIKADFMFEEYLGLDSHQKLILTKETKSDKNNRHGWKQPSYVPPSEK VCIIQDDDEIMSNGATEDSSLPSFRLIDNDFEEVATVEGGPAVVEAQTDMGNNNYDLSERTIFDHIREKAKNFPFLNTSNSISAVSSEAFSFPSEVGSNC NQPDQKRMLEAGDDGIIDLTVDRSWIEQDEEVLNSHGSTNEGHFIHLLDDEGGCPSSRPEKALTGEAIFDHIRRKAEEYPTIPTTTSFQLWGNNNNPSPP QPLPEPSSVPPPTRLQGGQIFSPDMNPKVKREAACCPSTPAGTLTALSWGRQKTSPVSKVTAGPVEMLSFDISMMKDSTATTDSSRRGKEKDGRDVFPPS ANGSKRQRCLVAVPEQTREADSFMGFQSVFSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	0	1
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10014551 [exp]	1.7	0.8622
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	3.7	0.8081
AT4G35290		ATGLUR2, ATGLR3...	GLUTAMATE RECEPTOR 3.2, glutam...		Lus10026552 [exp]	4.2	0.7954
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10025172 [exp]	5.7	0.7815
AT5G54860			Major facilitator superfamily ...		Lus10017090 [exp]	13.8	0.7466
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	15.0	0.7635
AT5G24970			Protein kinase superfamily pro...		Lus10020103 [exp]	15.7	0.7223
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	19.0	0.7625
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013074 [exp]	23.4	0.7724
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10035965 [exp]	31.4	0.7505

Compare expression of checked genes

Lus10032137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.