Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01560 181 / 3e-50 Protein of unknown function (DUF1421) (.1) AT5G14540 172 / 1e-46 Protein of unknown function (DUF1421) (.1) AT4G28300 71 / 7e-13 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014549 [exp] 452 / 9e-153 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1) Lus10033692 [exp] 72 / 5e-13 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 72 / 8e-13 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10042086 [exp] 71 / 3e-12 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1) Lus10018089 [exp] 68 / 9e-12 AT5G14540 91 / 4e-19 Protein of unknown function (DUF1421) (.1) Lus10039827 [exp] 67 / 1e-11 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018593 [exp] 67 / 2e-11 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348500 [exp] 201 / 3e-57 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 100 / 3e-22 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 100 / 3e-22 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.019G095400 [exp] 68 / 8e-12 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 65 / 1e-10 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10032138 pacid=23161323 polypeptide=Lus10032138 locus=Lus10032138.g ID=Lus10032138.BGIv1.0 annot-version=v1.0 ATGAATACGTCGCAGCTAGTTGATAAGCAGATAATGGATTTGACCTCATCATCCTCCCCTTCCTCCGTCTCCCAACCGCAAGCCTTATCTCCCAAGTCCA ATTCCACAGGCGGCGGCGCTGGTAAGGACTTCATCAATTTTATGAATCACCCCAAGGACGACGACGATCAGCACGCCGATTACGGTGCTGGAACAGGTGA GAATGGAATTCGGAAGGAGGAGATCCTTCCTAGCTACGATTTCCACCTGATTCGTCCTGCTGTTGGTGGAGACTCCACCGGTGGTGCTAGGTCTTGGAAT TCCGCCGACGGCAAGTCCAGCTCTGTCACGATGAGCGGCTCTCCTGTCAGACATTATGGTTCCCTTGACTCTATTGAACCATCCAAAGATGTTTTGGAGA AGGACCGGAGCGTTTCTGATTCAGCAATACTATCTGAGATTGACAAAACTATGAAGAGACATACTGATAACATGTTGATCGTTCTAGAAGGTGTCAGTTC CCGGCTAATACAGTTGGAGAGTAGAACCCGCCACCTCGAGAGTTCTGTAGATGATTTGAAGGTTTCTGTTGGGAACAATCATGGAAGTGCTGATGGAAAA ATGAGACAGCTGGAGAATATCCTCCGAGAGGTTCGAACTGGAGTTCAGGCTGTGAAGGATAAGCAAGAACTTCTGGAGTCACAATTGCAACTTTCGAAGC TTCAGGTCTCTAAGGGAGACGAGCAGCAACCTGCAGCGGCACAGAACACTGCTTCTGCTTCTGCTCCGCCGCAGGCTCATCAACAGCAGCAGCAGCATGC TCCTGTGAATTTTCCGCAATCAATACCTTCGATACCGGTACAGGTTCCTCATCCTACCGTCCCTTCCTCACAGCAGCAGAGTTATCAACCAATAACTTCA CATCCCAACCAATTTGCACCGGCTGCTCCTTCCCCTCCTTCCATCTCTCAGCGAGATCCATACTATACTCCTGCTGCTGCTGCTCAAACTCAAGAGCCTC CAAACCCACAGTACCAGGTCCCGCCATCACAGCCGCCACAAGTACAACCAAACCCACAGTACCAGGTCCCGCCATCACAGCAGCCACAAGTACAACCTTC TCCCGCAGCTCCTCCGCATCAACTGTATCAACCTATTCCTCAGTCTCCATATCAGCAAACCCAGATACCTCAACCTCCACCACAATCTCAACTGCAACAA CTTTCAGCTAGTCACCACTCCGAGGAAGCATCTTATCTCGCCTCTCAAAGTTATCCGCCAAACCTACGCCATCCAACTTCTCAACCTCCACCAAATGGGC CCCACTCTCCCCGACTGTATTATGGTCCTTCCTCCCCGTTCGAGCCACCATCATCCATCAGGCCTAGTTCAGGATTATCTATTGGATACAATCCTCCGTC TGGAGCAGCCATGGAACTTTATCCTTATGGAGGACCAGCTTCTCAATACAGCGGCAGCAGCTCAACGATGAAACCTCCGCAACAAATCCAGTCTGGTTCT ATGTCCCATAGCGGCGGATCTGGGTACCCTCAACTTCCAACTGCTCGTATGCTACCTCAGGCATCGCCGGCCGGAAGGCCGGCAGCTGGCGGTGGCGGTG GATCGGGTTCTTCTTCTGCAAACAGGGTTCCTGTTGATGATGTGATCGACAAGGTGGCAACCATGGGATTCCCGAGAGATCAAGTCCATGAAGCAGTCCG GAAACTTACTGAAAACGGGCAGTCGGTTGACCTGAACGTGGTTCTGGATAAGCTAATGAATGGCGGAGGCTACTATGGACGATAG
AA sequence Show only first row Show all	>Lus10032138 pacid=23161323 polypeptide=Lus10032138 locus=Lus10032138.g ID=Lus10032138.BGIv1.0 annot-version=v1.0 MNTSQLVDKQIMDLTSSSSPSSVSQPQALSPKSNSTGGGAGKDFINFMNHPKDDDDQHADYGAGTGENGIRKEEILPSYDFHLIRPAVGGDSTGGARSWN SADGKSSSVTMSGSPVRHYGSLDSIEPSKDVLEKDRSVSDSAILSEIDKTMKRHTDNMLIVLEGVSSRLIQLESRTRHLESSVDDLKVSVGNNHGSADGK MRQLENILREVRTGVQAVKDKQELLESQLQLSKLQVSKGDEQQPAAAQNTASASAPPQAHQQQQQHAPVNFPQSIPSIPVQVPHPTVPSSQQQSYQPITS HPNQFAPAAPSPPSISQRDPYYTPAAAAQTQEPPNPQYQVPPSQPPQVQPNPQYQVPPSQQPQVQPSPAAPPHQLYQPIPQSPYQQTQIPQPPPQSQLQQ LSASHHSEEASYLASQSYPPNLRHPTSQPPPNGPHSPRLYYGPSSPFEPPSSIRPSSGLSIGYNPPSGAAMELYPYGGPASQYSGSSSTMKPPQQIQSGS MSHSGGSGYPQLPTARMLPQASPAGRPAAGGGGGSGSSSANRVPVDDVIDKVATMGFPRDQVHEAVRKLTENGQSVDLNVVLDKLMNGGGYYGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14540			Protein of unknown function (D...		Lus10032138 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	1.4	0.9073
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	2.0	0.9197
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	5.7	0.9014
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	8.9	0.8633
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	9.2	0.8775
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	11.6	0.8894
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	14.0	0.8989
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	14.4	0.8916
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	14.5	0.8607
AT1G45000			AAA-type ATPase family protein...		Lus10041964 [exp]	15.3	0.8828

Compare expression of checked genes

Lus10032138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.