Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27700 454 / 6e-146 C3HZnF zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014548 [exp] 1497 / 0 AT3G27700 593 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032140 [exp] 1128 / 0 AT3G27700 613 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014547 [exp] 1071 / 0 AT3G27700 623 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351532 [exp] 717 / 0 AT3G27700 612 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.017G072100 [exp] 711 / 0 AT3G27700 607 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.007G044400 [exp] 46 / 0.0001 AT4G36960 534 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G138600 [exp] 45 / 0.0001 AT4G36960 540 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032139 pacid=23161288 polypeptide=Lus10032139 locus=Lus10032139.g ID=Lus10032139.BGIv1.0 annot-version=v1.0 ATGGAACGCAGGGTTTCAGCACTGAAAAGAGTTGGTCTTTCTACTTCTGAATGTGTTGGTGACCCGGAGGAGAAGGAAGTCAGTGATGACGATGATGATG ACCGAAACCACAAGCATCGTAGGAAGGAGACACATTCAGGATCCATGGAGAGAGATTCCTCTGACCCTGTTTCCACTGGACCATACAGGAAGAAAATTAG ACAATTTGAAAATGGCCATTCCTACAGGGAAAATGAATCTGAAGATTGCACCACAAAGTTTGAAAAGAGGCGCCCTGGACCAGGACATTTCCCCCAAAGA GCCAGAATGAACCAGCCATTTTCTGGGAATTCCGGTCCCTTTCGCGGGAGAGGAAGGGACCCTGGTCCATGGGGTCAACGTGATTCCAGATTCAACCAAG CTAATCAGGCTGCTGGTCTCTTTCCAGGGAGGGGATTGCCCAATGTTTCAAATCTACAAAGTGCATCCTGGAATGCGTTTGGATTGAATCCAGCAATTCC TAATGGTGGCTTCGATACACTTCACACCATGGGATTGCAAGGTACATTGGCACCAGCAGTAAACGCTTCATTGAATATGGACATCAGGCGACAGCGTTGT AGGGATTTTGAGGAGCGTGGATTTTGCCTTAGAGGGGACATGTGTCCAATGGAGCATGGTGTTAATCGTATTGTCGTTGAAGATGTCCAGGGCCTTTCTC AGTTTAATCTCCCTGTTTCACTCCCTAATGCACAACTGGTGGGAAATCCTCCTGTTCCAGCAGGCTTGCAACCGATGGGTGCTCCTTCATCCATCTCGAT GAGTAAAGCTGGAAATGGAAACAGCAGCAAATCTGGACTGTATGATGATAGTATCGGATTGAATAATGGATATCCTAGCTCTGCTACAGCAAGTGAAGCA GACTTTTATGATCCTGATCAACCCTTGTGGAATACCAATGATCCCGGAACATCAAATATACCCTTACATTCATCCAGAAATAATGAAAGTGAATCTGTGA TTGATGATCCTTCTGATTGGACCCGCTCTAGGTTCCATGACAGTACTGATAATGCTGGGATGCATGCTGGTTCTGTCACAGGTTCATCTATTTGGGGCAG GGTTGGTAGTAGTACGCGAAATAGATTAGATGGAATAGATTCAACTGCAGGCACTATGGGTCATTTGGAACATGAAGCAAAGGAGAGCCAGGAGGCGGCA GGCAATATTCGAGGTACGTTTCGTCAAGGAAAACATGTTTCTGCCGAGGATACTGGCCCAACCTCTGCCAAAGGTCACAGTGAGCCCATGCGTGTTATGC GAAAGCCATCACAAAAGGCATTGCGTACATTATTTGTCAACGGTATTCCACACATAAACAACAAAAGAGAGGCTCTTCTTTCTCATTTCCAAAAGTTTGG TGAGGTAATTGATATTTATATACCCTCCAATAGTGAACGGGCATTTGTTCAGTTCTTGAAGACAGAAGCAGCAGAAGCTGCTCTACGGGCTCCTGATGCT GTAATGGGCAATCGATTTATCAAGTTGTTCTGGGCCAATCGTGATAGCGTACTTGATGATGGAGCAAGCAGTAGTAGTGGTGTATCTTTACCTCCAGGTG GTGTGGCATCAAACTCAGGTCCATTGAATCCTCCTGTTGCTAACAGGGGAAAAGATAGCAATCAGTACACCGGAACAAAGGTTCCTGTTAGTGCCTCTCA CACTGATTCTTCCATGTCTTCCAATGAGTTCAAAAAGGTACCCAGTACAAATGGTTCCAAATGCCCTCCCCCTTTCCAGAAAAAGCTAGAACAATTGAAG GAAGAGCTTCGGAAAAAACAGGAGATGCTTGACCAGAAAAAAAATGACTTCCGGCGCCAATTGGACAAACTTCAAAAACAAGCCACAGTAACCAAAAATG AGGTAGTGAGTGAAACTATCAACAAACCAAAAGTAGCTGGCGATGCTGCCAACCTTGCTGGTCATACCCTGTCTGATCCTCCCTCACCCCATGGTGAGAG AAGGGTTGATAAGAATAGATCTGCTGAAACTGTGTCATCCATTACAAAGGCGAGTGCACGGACAGCACCGTTGGAATCTTCAGGGTCAAAGCCATCAGTA GAGACAATAGTACCTGTTGTTGGCTCTCCTTATCTGGCCAATAGATACAAATTGGATAATCGCCCGACAACCTTCAGAATCATCCCTCCACTGCCGGCTG CTTTAGCCAATGTTGCCGTTTTGAAGGAGCACTTCTCTACTTTTGCTGATGTTACTTCCGTGGAAATAGAGGATACTGGACCGTGTAATAGTGATGGTAA TACATCAGAGATGGCTAAGCTGTTCTCAGCTAATGTAACTTTTGCAACTCGCCGTTCAGCCGAGAAAGCATTTCTCAATGGTAAAACCTGGCAAGAGAAC GATTTACAGTTTGTGTGGGTGGCATCGAGTACATCCATCAGCGAACCTAGGAGTAGAACAAAAACATTAGCTGTTCCAGCTGAGAAGGTGAAAAATGTTG ATTCTGAGGATGCTTCTTTATCTGGAAATGGAGAAACTCAGAAATCAGAAACAAATGACGGTGTAGAAGAGAAAAGGGAATTGCATGAAGCTTCTGAATG CTATTTAAATGACGAATCACTGCAGGTAAAGCTTGCTGGAACTGACATGCGTGAATCTGTCGAAGGTGATCATGGGTGCTGA
AA sequence Show only first row Show all	>Lus10032139 pacid=23161288 polypeptide=Lus10032139 locus=Lus10032139.g ID=Lus10032139.BGIv1.0 annot-version=v1.0 MERRVSALKRVGLSTSECVGDPEEKEVSDDDDDDRNHKHRRKETHSGSMERDSSDPVSTGPYRKKIRQFENGHSYRENESEDCTTKFEKRRPGPGHFPQR ARMNQPFSGNSGPFRGRGRDPGPWGQRDSRFNQANQAAGLFPGRGLPNVSNLQSASWNAFGLNPAIPNGGFDTLHTMGLQGTLAPAVNASLNMDIRRQRC RDFEERGFCLRGDMCPMEHGVNRIVVEDVQGLSQFNLPVSLPNAQLVGNPPVPAGLQPMGAPSSISMSKAGNGNSSKSGLYDDSIGLNNGYPSSATASEA DFYDPDQPLWNTNDPGTSNIPLHSSRNNESESVIDDPSDWTRSRFHDSTDNAGMHAGSVTGSSIWGRVGSSTRNRLDGIDSTAGTMGHLEHEAKESQEAA GNIRGTFRQGKHVSAEDTGPTSAKGHSEPMRVMRKPSQKALRTLFVNGIPHINNKREALLSHFQKFGEVIDIYIPSNSERAFVQFLKTEAAEAALRAPDA VMGNRFIKLFWANRDSVLDDGASSSSGVSLPPGGVASNSGPLNPPVANRGKDSNQYTGTKVPVSASHTDSSMSSNEFKKVPSTNGSKCPPPFQKKLEQLK EELRKKQEMLDQKKNDFRRQLDKLQKQATVTKNEVVSETINKPKVAGDAANLAGHTLSDPPSPHGERRVDKNRSAETVSSITKASARTAPLESSGSKPSV ETIVPVVGSPYLANRYKLDNRPTTFRIIPPLPAALANVAVLKEHFSTFADVTSVEIEDTGPCNSDGNTSEMAKLFSANVTFATRRSAEKAFLNGKTWQEN DLQFVWVASSTSISEPRSRTKTLAVPAEKVKNVDSEDASLSGNGETQKSETNDGVEEKRELHEASECYLNDESLQVKLAGTDMRESVEGDHGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	0	1
AT4G30100			P-loop containing nucleoside t...		Lus10033462 [exp]	4.1	0.9185
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	4.9	0.8790
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	6.9	0.9004
					Lus10005528 [exp]	11.2	0.8785
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10038363 [exp]	11.4	0.9091
AT1G72390			unknown protein		Lus10013169 [exp]	11.5	0.8802
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019080 [exp]	11.6	0.8462
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	14.9	0.7908
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	15.2	0.8874
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	18.3	0.8870

Compare expression of checked genes

Lus10032139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.