Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27700 486 / 8e-158 C3HZnF zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014547 [exp] 1472 / 0 AT3G27700 623 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032139 [exp] 1132 / 0 AT3G27700 588 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014548 [exp] 1125 / 0 AT3G27700 593 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072100 [exp] 730 / 0 AT3G27700 607 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G351532 [exp] 696 / 0 AT3G27700 612 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10032140 pacid=23161325 polypeptide=Lus10032140 locus=Lus10032140.g ID=Lus10032140.BGIv1.0 annot-version=v1.0 ATGGAACGCAGAGTTTCTGCCCTAAAGAGAATTGGTCTTTCTACTTCTGATTGTGTTAGTGACCCAGAGGAAAAGGAAATCAGTGACGAGGATGATGATG ACCGCAATCACAAGCATCGTAGGAAGGATGAACGTTCAGAGTCTATGGAGAGAGATTCCACTGATCCTGTTTCCACTAGGCCGTACAGGAAGAGAAATAG ACAGTTTGAAAATGGTAATTCTTCTAGGGAAAATGAATCTGAAGCATACACCACAAAGTTTGAAAAGAGACGCCCTGGCCCAGGGCATTTCTCCCAAAGG ATCAGAACGAACCAACCATTTTCGGGGGATCCTGGTGCTTTTCAGGGGAAAGGAAGGGACCCTGGTCCTTGGAGTCAACGTGATTCTAGATTCAACCAAG TCGATCCTGCTGCTGGTCTCTTTACAGGGAGGGGGTTGCCCAATGTTTCAAACCCGCAAAGTGCATCCTGGAATGCTTTTGGATTGAATTCAGGAATTCC AAATGGCAGCTTGGATACACTTCATACCATGGGATTGCAAGGACCATTGGCACCGGCAGTAAACGTTTCATTGAATATTGGCATTAGGCGACAGCGTTGC AGAGATTTTGAGGAACGTGGATTTTGTCTTAGAGGAGACATGTGTCCAATGGAGCATGGTGTTAATCGTATTGTTGTTGAAGATGTCCAGAGCCTTTCTC AGTTTAATCTCCCTGTTTCACTCCCAAATGCGCAACTGTCGGGAACTCCTGCTGTTCCAGGGGGCTTACAACCAATGGGTGCTTCTTCAGCCATGTTGAT TAGTCAAGCTGTAAATGCCAAAAGCAGCAAATCTGGCCTCTACAGTGACAATAGCGAGCTGAATAGTGGATATCCTAGCTCTGTTACCAATGGTGAAGCA GACTTCTATGATCCAGATCAACCTCTGTGGAATAACAATGTTCCTGAAACATCAAATACACTCTTACCCCTGCATTCTTCCAATAATAATGGAAGTGGAT TTTTTATGAATGTTGATCCCTCTGATCGGACCCGTGCCAGGTTACATGACAGTACTGATATACATTCTGGTTCTGGCACAGGCTCATCTATTTGGGGCAG GGTTGGTAGTATGAGAAATAAATTAGATGGGAAAGAGAGAATTGATTCAACTGCTGGTACCATGAGGTATTTGGAAGATGAAGCTAAGGAGGATGAAGTG TCAGCAAGTCTTCGAGATTCGTTTCGTCAAGGAAAACATGTTTCTAGCGGGGATACTGGCCCAACCTCTGCCAAAGGTCAGGGTGAGCCCATGCGTTTTA TGCGAAAGCGAAAGCCGTCTCAGAAGGCATTGCGTACACTATTTGTCAATGGTATTCCTCACATGAACAACAAAAGGGAGGCTCTTCTTTCTCATTTCCA AAAGTTCGGTGGGGTAATTGATATTTATATACCCTCCAATAGTGAACGGGCGTTTGTTCAGTTTTCGAAGACAGAAGCAGCAGAAGCTGCTCTAAGGGCT CCTGATGCTGTCATGGGCAATCGATTTATCAAGTTGTTCTGGGCTAATCGTGATAGCATACCTGATGATGGTGTAAGCAGTAGTAGTGGTGTATCTTTAC CTCCAGGTGGTGTGGCATCAAACTCAGGTCCGTCCCATCCTCCTGTTGCTAACAGGGGGAAAGATAGTAATCAGTACCGTGGAACAAAGGTTCCTGTTGG TCCCTCTCACACTGATTCTTACATGTCATCCAATGAGCACAAAAAGGCACCCGATACAAATGGTACCAAATGCCCTCCTCCTTTGCAGAAAAAGCTAGAA CAGTTGAAGGAAGAACTTCGCAAAAAACAGGAGATGCTTGACCAGAAGAAGAATGATTTCCGGCGCCAATTGGACCAACTCCAGAAACAAGCTACAGTAA CCAAGAGTGAGGTAGTGAGTGAAACATTGAAGAGACCTAAAGTAGCCGGTGATGCCACCTCAACCTGTGGTGAGATGATGACTGATAAGAACAAATCAGC AGAAACTGTGTCATCCACTTCAAAGATGAATGCAGGGGCAGCGAAAGTGGAATCTTCAGGGTCAAAGCCATCAGGAAAGACACTATTACCTGATGCTCGC TCTCCTTATCCGGCAAATAGATACAAGTTGGACAATCGACCTTCAACCTTCAGAATAGTTCCCCCCTTGCCAGTTGGTTTAGCAAATGTTGCCACTTTAA AGGAGCACTTCTCCACTTTTGGTGATGTTACTTCCGTGGAGATAGAAGATGCTAAACCATGTGACAGTGACGATAATACATCAAAGACGGCGAAACCGTG CTCGGGTAATGTGACTTTTGCAACTCGCAGTTCAGCCGTCAAAGCATTTCTGAATGGTAAAAGCTGGCAAGACCACAGGTTACAGTTTGTGTGGGTGGCA TCTAGTACATCCACCAACCAACCTAGGGGTAAAACAAACACATTAGCTGTTCCGACAGAGAAGGTAATAAACGTTGTTGATTCTGAGGATGCTTCTGCAT GTGGAAACGGGGGAACTCAGAACTCAAAAGCAGATAATGGTGTAGTAGAAGGAAAAAGGGAACTGCATGATGCTGATCAAGCCTATTCAACTGAAGAATC ACCCCAGGGAAAGCCTGCAGCAATCGAAATTTCCTGCGACGAAGAGGCAATAAGATGGGGATCCGGTGAAGGTGACGACGGGTGCTGA
AA sequence Show only first row Show all	>Lus10032140 pacid=23161325 polypeptide=Lus10032140 locus=Lus10032140.g ID=Lus10032140.BGIv1.0 annot-version=v1.0 MERRVSALKRIGLSTSDCVSDPEEKEISDEDDDDRNHKHRRKDERSESMERDSTDPVSTRPYRKRNRQFENGNSSRENESEAYTTKFEKRRPGPGHFSQR IRTNQPFSGDPGAFQGKGRDPGPWSQRDSRFNQVDPAAGLFTGRGLPNVSNPQSASWNAFGLNSGIPNGSLDTLHTMGLQGPLAPAVNVSLNIGIRRQRC RDFEERGFCLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPNAQLSGTPAVPGGLQPMGASSAMLISQAVNAKSSKSGLYSDNSELNSGYPSSVTNGEA DFYDPDQPLWNNNVPETSNTLLPLHSSNNNGSGFFMNVDPSDRTRARLHDSTDIHSGSGTGSSIWGRVGSMRNKLDGKERIDSTAGTMRYLEDEAKEDEV SASLRDSFRQGKHVSSGDTGPTSAKGQGEPMRFMRKRKPSQKALRTLFVNGIPHMNNKREALLSHFQKFGGVIDIYIPSNSERAFVQFSKTEAAEAALRA PDAVMGNRFIKLFWANRDSIPDDGVSSSSGVSLPPGGVASNSGPSHPPVANRGKDSNQYRGTKVPVGPSHTDSYMSSNEHKKAPDTNGTKCPPPLQKKLE QLKEELRKKQEMLDQKKNDFRRQLDQLQKQATVTKSEVVSETLKRPKVAGDATSTCGEMMTDKNKSAETVSSTSKMNAGAAKVESSGSKPSGKTLLPDAR SPYPANRYKLDNRPSTFRIVPPLPVGLANVATLKEHFSTFGDVTSVEIEDAKPCDSDDNTSKTAKPCSGNVTFATRSSAVKAFLNGKSWQDHRLQFVWVA SSTSTNQPRGKTNTLAVPTEKVINVVDSEDASACGNGGTQNSKADNGVVEGKRELHDADQAYSTEESPQGKPAAIEISCDEEAIRWGSGEGDDGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032140 [exp]	0	1
AT5G56700			FBD / Leucine Rich Repeat doma...		Lus10017238 [exp]	7.9	0.8205
AT2G21390			Coatomer, alpha subunit (.1)		Lus10037538 [exp]	9.6	0.8793
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Lus10019679 [exp]	12.2	0.8782
AT3G01810			unknown protein		Lus10015805 [exp]	14.8	0.8690
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	17.2	0.8193
AT5G45290			RING/U-box superfamily protein...		Lus10037267 [exp]	17.7	0.8607
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10024828 [exp]	17.7	0.8702
AT3G60380			unknown protein		Lus10042896 [exp]	20.0	0.7440
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	20.7	0.8644
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	24.9	0.8473

Compare expression of checked genes

Lus10032140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.