Plant FIBer expression Database

Lus10032143 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01516 99 / 6e-26 unknown protein
AT5G14690 62 / 1e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014544
[exp]
206 / 1e-67 AT3G01516 105 / 2e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G349700
[exp]
81 / 6e-19 AT3G01516 71 / 2e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10032143 pacid=23161089 polypeptide=Lus10032143 locus=Lus10032143.g ID=Lus10032143.BGIv1.0 annot-version=v1.0
ATGCAGGAACAACGGCGTCCAGAGATCATCAGAAGAAAGAGACGGTCGACAACGGCGTGCAGTACTAGCAGCGAAGAATACGAATACGACGACGTAGTGG
CAGTCCGACCGTCCACGTCATCGTCTTCGAAAGAAGAGTGCTGCTGTAGCCCGGCATGCACAGCTGGCGCAATAGCGGACTGCGTGGCGCTCTGCTGCTG
CCCGTGCGCGCTTTTCAACTTCCTCACGCTCGCATTCGTCAAGATCCCTTGGTCGGTGGGGCGGAGGTGCGTCGGGGAGATTATGCGGCGGCGGAAGAAG
AAGAAGGCGAAGATTAATGCTGGTACGGTGATGTTGGAGGTGGTCGCCGGCGGCGGCGGAGGACGGCGGACGAGGGAATTAGAGGAGGAGGAAGGTGCTG
ATGAGGATGTGATATATGTGGTGGAGAGATCGGATGGTAGTCGGAGTTTGAGGGTGACCGGAGATGATGAGGCAGAGGAGGACGGTGGGGGCGGCGGTGG
TGGACGGAGGATGAGTGCGAAGTTTGAGGCGGAGAAAGTTTGGTTGGAGCTTTACCAGGTTGGTCATTTGGGGTTTGGTAGGGTATCTTTTACCGGCGTA
CCGGCCCATTATAACTCTTAA
AA sequence
>Lus10032143 pacid=23161089 polypeptide=Lus10032143 locus=Lus10032143.g ID=Lus10032143.BGIv1.0 annot-version=v1.0
MQEQRRPEIIRRKRRSTTACSTSSEEYEYDDVVAVRPSTSSSSKEECCCSPACTAGAIADCVALCCCPCALFNFLTLAFVKIPWSVGRRCVGEIMRRRKK
KKAKINAGTVMLEVVAGGGGGRRTRELEEEEGADEDVIYVVERSDGSRSLRVTGDDEAEEDGGGGGGGRRMSAKFEAEKVWLELYQVGHLGFGRVSFTGV
PAHYNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01516 unknown protein Lus10032143
[exp]
0 1
AT3G01516 unknown protein Lus10014544
[exp]
3.0 0.9525
AT5G63090 AS2 LOBB, LOB Lateral organ boundaries (LOB)... Lus10001139
[exp]
10.7 0.9418
AT4G32890 GATA GATA9 GATA transcription factor 9 (.... Lus10011430
[exp]
10.8 0.9471
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10024616
[exp]
13.9 0.9466
Lus10024615
[exp]
16.6 0.9427
AT4G14750 IQD19 IQ-domain 19 (.1) Lus10041188
[exp]
19.8 0.9324
AT2G04400 Aldolase-type TIM barrel famil... Lus10006354
[exp]
22.3 0.9405
Lus10005394
[exp]
22.8 0.9366
AT5G54010 UDP-Glycosyltransferase superf... Lus10040178
[exp]
23.0 0.8935
AT3G19990 unknown protein Lus10028681
[exp]
24.9 0.9346

Lus10032143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.