Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14720 839 / 0 Protein kinase superfamily protein (.1) AT1G79640 569 / 0 Protein kinase superfamily protein (.1.2) AT1G70430 531 / 0 Protein kinase superfamily protein (.1) AT4G10730 508 / 3e-172 Protein kinase superfamily protein (.1) AT4G24100 491 / 1e-165 Protein kinase superfamily protein (.1) AT1G23700 375 / 1e-123 Protein kinase superfamily protein (.1) AT4G14480 321 / 1e-102 Protein kinase superfamily protein (.1) AT1G53165 218 / 1e-61 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 214 / 2e-60 Protein kinase superfamily protein (.1) AT1G69220 207 / 6e-57 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014542 [exp] 1250 / 0 AT5G14720 895 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 531 / 0 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 526 / 6e-179 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001677 [exp] 506 / 9e-169 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 494 / 2e-164 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 487 / 2e-163 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 477 / 9e-160 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10021882 [exp] 316 / 2e-100 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 209 / 6e-63 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349300 [exp] 931 / 0 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 548 / 0 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 547 / 0 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 514 / 4e-174 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G084700 [exp] 503 / 3e-170 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 334 / 8e-107 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 259 / 2e-79 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 261 / 4e-79 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 213 / 5e-60 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 212 / 2e-59 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032144 pacid=23161281 polypeptide=Lus10032144 locus=Lus10032144.g ID=Lus10032144.BGIv1.0 annot-version=v1.0 ATGGAGAGCGTTTTGGAGAAAAAATATCCTTTAAGTGCTAGCGATTATGAATTGTATGAAGAGGTTGGGGAAGGTGTCAGTGCCTCTGTATATAGGGCTC TCTGTGTTCCACTCAATGAGGTTGTTGCAATTAAGGTTCTGGATTTGGAGAAGTGCAACAATGACCTCGATGGTGTCCGGCGGGAGGTACAGACAATGAG TTTGATCGATCACCCCAATTTGCTACGTGCACATTGCTCATTCACTGCTGGCCACTGCCTTTGGGTTGTAATGCCGTACATGGCTGGGGGTTCGTGCCTT CATATTATGAAATCTTCTTATCCGGAAGGTTTTGAAGAGCCTGTTATTGCCACGTTATTGCGCGAAACTCTTAAAGCTCTTGTCTATCTTCATTTCCATG GTCACATACATCGAGATGTTAAGGGAAAGTTAGCCCTGGGAGGGGACAATAGTATTAGTTCAGTAGATTTTGGTGGTGTTTCGATTTTCATTTGTCTGAA AATTGTGGCTGGAAACATTTTGATTGATTCTAATGGTGCGGTCAAGCTAGCTGATTTTGGAGTGTCAGCATGTATGTTTGATACCGGAGATAGGCAACGG TCAAGAAATACTTTTGTGGGAACTCCATGCTGGATGGCTCCTGAAGTTATGCAGCAGTTGCATGGTTATGACTTTAAAGCAGACATTTGGTCACTTGGAA TAACAGCCCTGGAACTTGCTCATGGCCATGCACCTTTCTCCAAGTACCCACCAATGAAAGTTTTGCTGATGACCTTACAGAATGCTCCTCCAGGTCTGGA TTATGAAAGAGATAAAAGATTTTCAAAGTCATTTAAAGAGTTGGTAGCCGCTTGCTTGGTGAAGGATCCAAAGAAACGACCCTCCTCAGAAAAGCTTTTG AAGCACCATTTTTTCAAACATGCACGCTCTACTGATTATGTTGCTCGCTCGATAATTGATGGACTTTCACCTTTAGGGGAACGTTTTAGGATACTGAAGG CAAAAGAAGCGGATCTTCTGATGCAAAACAAGCCGCAATATGAGGATAAAGAGCAATTATCTCAGCAAGAGTACATAAGAGGGATCAGTGCTTGGAATTT CAATCTGGAGGATTTGAAAAACCAGGCTGCTCTTATTCAGGATGATTGTAGCATGGAAGAGCAAGGTATCTCTGAAAAGCTAATAGACCAGCAAGACAGT GAGCTTCTTGACGATAAGATATCCGGTAAAGCAGCTAACCACACTACACCTACTATTAACGAGGATGAGTACCCTGATGTTCCTGATTTGGAAAGTTCAC TGGCTTCATTTCCTATTAAACCTCTTCAAGCACTAAGAGGTTGTTTTGATGTCGGTGAGGATGATGAGGGTGCAACTACTCCGGATTTGAAAGGTAATAG TGAAGTAGAACTGGAGCAGCAGGTAATTATGGGGCCAAATACAACAGAACAAGAGATTGAAACAAATGGAGTTCAGAATATTGGACGTACTAGCACTTTA CAGCGCCAAATTAGTAACGAGAACAGAAGATTTTCGAGTGGCCCAATGATAGCAGATATCAGTCTTTCTCAGCCAAAGTTTTCCAGTGAGGACAACAGGG ATTTTGTAAAGACACGGTACCAATCTGACCGAAACTATAGTGGTCCTATGTTATATCGGCAGAAGAGAGATACCAACAACCACTCATCTGCAGAGGATAC TGCAGATGGAGCCATTGTTCAACGTAAGGGACGGTTTAAGGTTACCTCTGCTGACCTTAGTCCTAAGGGTTCAACTAGTCCGACATCATCATTCGTCACA ACTGCTGCGGTTCTCCCATCACTACAGTGCATCTTACAGCAGAACACCATGCAAAGGGAGGAAATCATTAAATTGATCAAGTATGTGGATCAATCTGGCA AGCAGACCGAGACAGTTGAGTCTTCCTTCAATGAAGTTTTGCAGGTTCAGTCGTACTTCTCTCTCTAA
AA sequence Show only first row Show all	>Lus10032144 pacid=23161281 polypeptide=Lus10032144 locus=Lus10032144.g ID=Lus10032144.BGIv1.0 annot-version=v1.0 MESVLEKKYPLSASDYELYEEVGEGVSASVYRALCVPLNEVVAIKVLDLEKCNNDLDGVRREVQTMSLIDHPNLLRAHCSFTAGHCLWVVMPYMAGGSCL HIMKSSYPEGFEEPVIATLLRETLKALVYLHFHGHIHRDVKGKLALGGDNSISSVDFGGVSIFICLKIVAGNILIDSNGAVKLADFGVSACMFDTGDRQR SRNTFVGTPCWMAPEVMQQLHGYDFKADIWSLGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVAACLVKDPKKRPSSEKLL KHHFFKHARSTDYVARSIIDGLSPLGERFRILKAKEADLLMQNKPQYEDKEQLSQQEYIRGISAWNFNLEDLKNQAALIQDDCSMEEQGISEKLIDQQDS ELLDDKISGKAANHTTPTINEDEYPDVPDLESSLASFPIKPLQALRGCFDVGEDDEGATTPDLKGNSEVELEQQVIMGPNTTEQEIETNGVQNIGRTSTL QRQISNENRRFSSGPMIADISLSQPKFSSEDNRDFVKTRYQSDRNYSGPMLYRQKRDTNNHSSAEDTADGAIVQRKGRFKVTSADLSPKGSTSPTSSFVT TAAVLPSLQCILQQNTMQREEIIKLIKYVDQSGKQTETVESSFNEVLQVQSYFSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	0	1
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	1.4	0.8970
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	3.5	0.8650
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	4.5	0.8908
AT1G05960			ARM repeat superfamily protein...		Lus10001161 [exp]	4.6	0.8739
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	5.9	0.8834
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	6.2	0.8897
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	6.5	0.8603
AT3G20720			unknown protein		Lus10043072 [exp]	6.7	0.8695
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	7.1	0.8565
					Lus10029084 [exp]	7.1	0.8203

Compare expression of checked genes

Lus10032144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.