Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27880 69 / 1e-14 Protein of unknown function (DUF1645) (.1) AT1G70420 54 / 2e-09 Protein of unknown function (DUF1645) (.1) AT1G23710 54 / 3e-09 Protein of unknown function (DUF1645) (.1) AT3G62630 52 / 2e-08 Protein of unknown function (DUF1645) (.1) AT2G15760 41 / 0.0001 Protein of unknown function (DUF1645) (.1) AT5G62770 40 / 0.0001 Protein of unknown function (DUF1645) (.1) AT3G01513 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014541 [exp] 211 / 4e-70 AT3G27880 120 / 6e-33 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 47 / 9e-07 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 47 / 1e-06 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 46 / 2e-06 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 44 / 9e-06 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10014025 [exp] 43 / 3e-05 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 43 / 3e-05 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10006479 [exp] 40 / 0.0002 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10030876 [exp] 40 / 0.0003 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G041300 [exp] 56 / 6e-10 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.012G081000 [exp] 52 / 2e-08 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 50 / 1e-07 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 47 / 6e-07 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 47 / 1e-06 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 46 / 2e-06 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 45 / 3e-06 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 44 / 1e-05 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 41 / 0.0001 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 39 / 0.0004 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10032145 pacid=23161302 polypeptide=Lus10032145 locus=Lus10032145.g ID=Lus10032145.BGIv1.0 annot-version=v1.0 ATGTCGCCTCCGCCGTGGCGGCGTGGGGTAATCGGAGCGTCGCCTTCTCCGGGGAGATGCGTGAAGAGCAATTCGACGGGATCGTCGTCGTCGAAGCCGC GGTGGCGGCTGCGGGATTTGCTCCGTAGATCCAGCAGCGACGGTAAAGCGGTGTCGCATTTGTTAGTCAATCCAAACTCTAGTAGTAGTTGTGGTAAAAT GGACGAGGTTAAATCGGGGAAAAAGATAGACGAGAAGTCTCAGGCGAGAAAACCACCGCCGGCGGGGAAATCGACGAGGAAGAAATTGTCGGCGCATGAG GTGTTCTACACGAAGAGCAAGGCGTTGAAGGAGGAGGATAAGAGGAGGTCGTATTTGCCGTACCGGCAAGATCTCGTCGGGCTTTTCTCAACGGCGAACG GTTTCACGAGGACGTTCACTCCATTTTAG
AA sequence Show only first row Show all	>Lus10032145 pacid=23161302 polypeptide=Lus10032145 locus=Lus10032145.g ID=Lus10032145.BGIv1.0 annot-version=v1.0 MSPPPWRRGVIGASPSPGRCVKSNSTGSSSSKPRWRLRDLLRRSSSDGKAVSHLLVNPNSSSSCGKMDEVKSGKKIDEKSQARKPPPAGKSTRKKLSAHE VFYTKSKALKEEDKRRSYLPYRQDLVGLFSTANGFTRTFTPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27880			Protein of unknown function (D...		Lus10032145 [exp]	0	1
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009693 [exp]	1.7	0.9241
AT4G28270		ATRMA2	RING membrane-anchor 2 (.1)		Lus10031641 [exp]	3.9	0.9148
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	4.6	0.8978
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	4.7	0.8862
AT1G23390			Kelch repeat-containing F-box ...		Lus10029127 [exp]	5.5	0.8980
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	5.5	0.8839
AT1G48780			unknown protein		Lus10009004 [exp]	8.0	0.8964
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	11.2	0.9156
AT1G23390			Kelch repeat-containing F-box ...		Lus10029128 [exp]	13.9	0.8856
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10013298 [exp]	14.1	0.8727

Compare expression of checked genes

Lus10032145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.