Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 1346 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 1010 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 941 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 935 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 918 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 886 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 877 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT5G36150 806 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT1G78500 796 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15370 781 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014538 [exp] 1550 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 1311 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 865 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1) Lus10013546 [exp] 862 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 848 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 839 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 810 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016439 [exp] 675 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 674 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079300 [exp] 1366 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 1341 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002200 [exp] 1242 / 0 AT2G07050 1186 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 1136 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002400 [exp] 959 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 939 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.011G085000 [exp] 911 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 902 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.001G049100 [exp] 901 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 899 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10032146 pacid=23161254 polypeptide=Lus10032146 locus=Lus10032146.g ID=Lus10032146.BGIv1.0 annot-version=v1.0 ATGTGGAAGCTGAAGATATCGGAGGGAGGGAATCCATGGCTGAGGACCACCAACAATCATGTAGGAAGGCAAGTCTGGGAGTTCGATCCAGAGCTCGGAT CTCCCGAGGAGCTCTCGGCGATTGAGCTAGCTCGTCGAGATTTCACCAAGAATCGATTTGAGCAGAAACACAGTGCCGATCTCCTTATGCGCATTCAGTT TTCCAAGGAGAATCCACTGGAACGTGTGTTACCTCAAGTTAAGCTAAGAGAGAAAGAAGATGTTACGGAGGAGGCTGTGACCACAACTTTAAGAAGGGCT TTGGATTACTATTCAACTATACAGGCTCATGATGGACACTGGCCGGGAGATTATGGAGGGCCTATGTTCCTCATGCCTGGTTTGGTTATTGCTCTGTCTG TCACTGGTGCAATGAATGCAGTTCTGTCGGAACAACACAAGAGTGAGATGTGCCGTTACCTCTACAATCACCAGAATGAAGATGGTGGCTGGGGCTTACA TATTGAAGGGCCTAGCACTATGTTTGGAAGTGTATTAAGTTATGTCACGTTACGGTTGCTTGGTGAGGGACCTAATGATGGAGAAGGAGCGATGGGAAAA GGGCGTGACTGGATCTTGAACCATGGTGGAGCTACTGCAATTACCTCATGGGGGAAATTGTGGCTTTCAGTACTTGGAGTATTTGAGTGGTCTGGCAATA ATCCCCTACCCCCTGAGATTTGGCTCCTTCCTTATATGCTCCCAATCCATCCAGGAAGGATGTGGTGTCATTGCCGAATGGTCTACTTGCCTATGTCCTA TTTATATGGGAAGAGGTTCGTTGGCCCCATCACCCCAACAGTATTATCATTGAGAAAGGAGCTTTTCAGTACCCCATATCATGAAATTGACTGGAATCGA GCACGAAATGAATGTGCAAAGGAGGATCTATACTACCCACACCCTCTGATTCAAGATCTGCTATGGGGATCCCTTCATAACTTTGTTGAACCTATTCTAA TGGCTTGGCCTGGAAAGAAGTTGAGAGAAAAAGCACTTCGGACTACACTCGAGCATATACACTATGAAGATGAAAACACCCGTTATATTTGCATAGGCCC TGTAAATAAGGTGTTAAATATGCTCTGTTGTTGGGTGGAGGACCCAAATTCGGAAGCTTTTAAGTTGCATCTTCCAAGGATTCCTGATTACCTTTGGGTT GCTGAGGATGGAATGAAAATGCAGGGGTATAATGGAAGTCAATTGTGGGACACCTCTTTTGCTGTTCAAGCAATTCTTTCAACCAACCTTGTTGAGGAAT ATGCTTCAACTCTAAAAAAGGCACACACATACGTCAAGAACTCCCAGGTCTTGGAAGACTGCCCTGGAGACCTTGATTATTGGTATAGACACATTTCCAA GGGTGCATGGCCTTTCTCAACTGCTGACCATGGATGGCCTATCTCAGACTGCACAGCTGAGGGATTGAAGGCAGCTCTTTTATTATCACAAAGTCCCTCA GAGCTTGTTGGAGAACCACTTGAAGCACAGCGATACTACAATGCTGTGAATGTGCTTTTTTCATTACAGAATGCTGATGGTAGCTTCGCAACGTATGAGC TCACAAGATCCTATAGCTGGATGGAGCTGATCAACCCAGCTGAAACCTTCGGTGACATTGTTATCGACTACCCTTATGTTGAATGTACTTCGGCTGCAAT TCAAGCTTTAATACCATTCAAGAAAATTTATCCCGGACATCGGACAGCAGAAGTGGACACTTGTATCAAAAAGGCTGTTGCATTCATTGAATCGATACAG GCTGCAGATGGCTCATGGTATGGCTCATGGGCCGTTTGCTTCACGTACGCTACATGGTTTGGTATAAAAGGATTGGTCGCTAGTGGAAAGAACTTCGATA ACAGCTCTAGCATTCGAAAAGCATGCAACTTTCTGTTGTCCAAGCAGTGTCCTTCAGGTGGCTGGGGAGAGAGCTATCTTTCATGTCAAACTAAGGTATA TCACAATCTTGAAGGTGATAACGGGCACGTGGTAAATACTGGATGGGCGATGCTGGCACTCATTGCTGCTGGCCAGGCTGAGAGAGACCCAGCTCCATTA CACCGTGCAGCCCGGTTTCTAATAAATTCTCAAATGGAGAACGGAGATTTTCCTCAGCAGGATATCATGGGAGTTTTCAATAGGAACTGTATGATAACTT ATGCAGCTTACAGAGACATATTTCCAATTTGGGCATTGGGAGAATACAGAACCAAAGTACTTCATGCTTCTCCCTCGTAA
AA sequence Show only first row Show all	>Lus10032146 pacid=23161254 polypeptide=Lus10032146 locus=Lus10032146.g ID=Lus10032146.BGIv1.0 annot-version=v1.0 MWKLKISEGGNPWLRTTNNHVGRQVWEFDPELGSPEELSAIELARRDFTKNRFEQKHSADLLMRIQFSKENPLERVLPQVKLREKEDVTEEAVTTTLRRA LDYYSTIQAHDGHWPGDYGGPMFLMPGLVIALSVTGAMNAVLSEQHKSEMCRYLYNHQNEDGGWGLHIEGPSTMFGSVLSYVTLRLLGEGPNDGEGAMGK GRDWILNHGGATAITSWGKLWLSVLGVFEWSGNNPLPPEIWLLPYMLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELFSTPYHEIDWNR ARNECAKEDLYYPHPLIQDLLWGSLHNFVEPILMAWPGKKLREKALRTTLEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRIPDYLWV AEDGMKMQGYNGSQLWDTSFAVQAILSTNLVEEYASTLKKAHTYVKNSQVLEDCPGDLDYWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSQSPS ELVGEPLEAQRYYNAVNVLFSLQNADGSFATYELTRSYSWMELINPAETFGDIVIDYPYVECTSAAIQALIPFKKIYPGHRTAEVDTCIKKAVAFIESIQ AADGSWYGSWAVCFTYATWFGIKGLVASGKNFDNSSSIRKACNFLLSKQCPSGGWGESYLSCQTKVYHNLEGDNGHVVNTGWAMLALIAAGQAERDPAPL HRAARFLINSQMENGDFPQQDIMGVFNRNCMITYAAYRDIFPIWALGEYRTKVLHASPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	0	1
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	1.0	0.8986
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	1.4	0.8623
AT2G25220			Protein kinase superfamily pro...		Lus10005345 [exp]	1.7	0.8550
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10025472 [exp]	4.2	0.8483
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10042122 [exp]	5.5	0.8156
					Lus10022823 [exp]	7.7	0.8518
AT1G34110			Leucine-rich receptor-like pro...		Lus10017782 [exp]	13.1	0.8540
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	15.0	0.8295
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	15.2	0.7976
AT4G19420			Pectinacetylesterase family pr...		Lus10034766 [exp]	15.2	0.8363

Compare expression of checked genes

Lus10032146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.